Co-expression analysis

Gene ID Zm.3780.1.S1_at
Gene name low-molecular-weight cysteine-rich protein LCR69
Homology with ArabidopsisSimilar to At1g47317: - (HF=9e-2)
Module size 6 genes
NF 0.67
%ile 89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.98Zm.3780.1.S1_atAW438304low-molecular-weight cysteine-rich protein LCR69-9e-2At1g47317-O.I.H.G.S.X.
0.6785.80.98Zm.4846.1.A1_atBQ538226cyclin B2-3e-7At1g76310CYCB2O.I.H.G.S.X.
0.6785.80.98Zm.4845.1.S1_x_atCD442886alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE-4e-5At4g03330SYP123 (SYNTAXIN OF PLANTS 123)O.I.H.G.S.X.
0.6179.50.97Zm.14138.2.A1_atCD219182hypothetical protein LOC100275347-3e-9At1g56423unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.6196.2.S1_atAI677134--3e+0At5g26880tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.
0.4759.90.98Zm.9411.1.S1_atCA827391SNF1-related protein kinase regulatory subunit beta-2-4e-1At4g26150CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.799.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
24.399.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.699.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.499.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.299.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.199.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.599.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.799.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.499.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0629800, orthologous to the query gene, Zm.3780.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7591.9Os02g0629800At1g47317-Cp-thionin1e-3At2g02100LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)O.I.H.G.S.X.
0.6787.2Os02g0264800At1g47317-Protein of unknown function DUF1070 family protein4e-3At2g46330AGP16 (ARABINOGALACTAN PROTEIN 16)O.I.H.G.S.X.
0.5471.9Os05g0543100At1g47317-Clathrin adaptor complex, medium chain familyprotein3e-65At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.5168.7Os01g0756900At1g47317-Conserved hypothetical protein8e-2At1g67860unknown proteinO.I.H.G.S.X.
0.4660.9Os04g0455600At1g47317-Conserved hypothetical protein7e-7At4g39860unknown proteinO.I.H.G.S.X.
0.4558.8Os05g0516800At1g47317-Ras-related protein RIC22e-25At1g16920ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)O.I.H.G.S.X.
0.4458.1Os03g0703100At1g47317-Beta-glucosidase1e-3At3g18080BGLU44 (B-S GLUCOSIDASE 44)O.I.H.G.S.X.
0.4355.4Os06g0598800At1g47317-Fatty acid elongase 1-like protein1e-28At5g43760KCS20 (3-KETOACYL-COA SYNTHASE 20)O.I.H.G.S.X.
0.4355.4Os05g0535900At1g47317-IQ calmodulin-binding region domain containingprotein1e+0At5g27690heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3541.7Os01g0969100At1g47317-Conserved hypothetical protein9e-75At1g08200AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)O.I.H.G.S.X.
0.3338.8Os07g0681700At1g47317-Glycosyl transferase, family 8 protein9e-2At2g38650GAUT7 (GALACTURONOSYLTRANSFERASE 7)O.I.H.G.S.X.
0.3236.3Os07g0573400At1g47317-Protein of unknown function DUF239 domaincontaining protein8e-42At3g13510unknown proteinO.I.H.G.S.X.
0.3236.3Os06g0308300At1g47317-65kD microtubule associated protein3e-29At5g55230ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1)O.I.H.G.S.X.
0.3032.7Os01g0660300At1g47317-Pyruvate kinase isozyme G, chloroplast precursor(EC 2.7.1.40)8e-50At5g52920PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)O.I.H.G.S.X.
0.2931.1Os07g0626500At1g47317-Protein kinase domain containing protein2e-3At5g10020leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.2931.1Os01g0226300At1g47317-Reticulon family protein4e-2At2g46170reticulon family protein (RTNLB5)O.I.H.G.S.X.
0.2831.1Os02g0760200At1g47317-Conserved hypothetical protein1e-5At4g24610unknown proteinO.I.H.G.S.X.
0.2831.1Os04g0625000At1g47317-Hypothetical protein1e-13At3g20350unknown proteinO.I.H.G.S.X.
0.2321.2Os10g0477100At1g47317-Ankyrin-like protein5e-43At4g14360dehydration-responsive protein-relatedO.I.H.G.S.X.
0.2117.9Os09g0433600At1g47317-Histone H42e-20At1g07660histone H4O.I.H.G.S.X.
0.1813.7Os08g0327400At1g47317-Enoyl-[acyl-carrier-protein] reductase [NADH],chloroplast precursor (EC 1.3.1.9) (NADH-dependentenoyl-ACP reductase)2e-32At2g05990MOD1 (MOSAIC DEATH 1)O.I.H.G.S.X.
0.1712.6Os09g0297400At1g47317-Phosphate/phosphoenolpyruvate translocator2e-11At5g33320CUE1 (CAB UNDEREXPRESSED 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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