Co-expression analysis

Gene ID Zm.3760.1.S1_at
Gene name hypothetical protein LOC100216911
Homology with ArabidopsisSimilar to At1g31480: SGR2 (SHOOT GRAVITROPISM 2) (HF=3e-12)
Module size 6 genes
NF 0.17
%ile 12.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.95Zm.3760.1.S1_atAW056221hypothetical protein LOC100216911-3e-12At1g31480SGR2 (SHOOT GRAVITROPISM 2)O.I.H.G.S.X.
0.5065.70.96Zm.435.1.S1_atAF069910.1pyruvate dehydrogenase E1 beta subunit isoform 3-3e-28At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.3233.40.95Zm.3492.1.A1_atBG550327hypothetical protein LOC100275578-2e-1At1g16490MYB58 (MYB DOMAIN PROTEIN 58)O.I.H.G.S.X.
0.125.90.95Zm.3644.1.S1_atCO525387hypothetical protein AY111178 /// hypothetical protein LOC100191318 /// hypothetical protein LOC100217011-8e-1At5g66390peroxidase 72 (PER72) (P72) (PRXR8)O.I.H.G.S.X.
0.104.60.96Zm.13640.1.A1_atCK348107--3e+0At2g35600BRXL1 (BREVIS RADIX LIKE 1)O.I.H.G.S.X.
0.083.40.95Zm.16644.1.S1_x_atCF602545hypothetical protein LOC100191653-4e-8At5g66080protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM253272ZM_4.5d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.797.2GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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