Co-expression analysis

Gene ID Zm.376.1.A1_at
Gene name Hypoxically induced transcript 2
Homology with ArabidopsisSimilar to At1g05000: tyrosine specific protein phosphatase family protein (HF=2e-3)
Module size 6 genes
NF 0.09
%ile 5.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.94Zm.376.1.A1_atBM074849Hypoxically induced transcript 2-2e-3At1g05000tyrosine specific protein phosphatase family proteinO.I.H.G.S.X.
0.6381.10.93Zm.17357.1.S1_atCK370769--5e+0At1g29195unknown proteinO.I.H.G.S.X.
0.3641.30.94Zm.5732.1.A1_atAY108368.1hypothetical protein LOC100272253-1e+0At1g05780unknown proteinO.I.H.G.S.X.
0.072.90.94ZmAffx.238.1.A1_atAI670250--1e+1At3g62140unknown proteinO.I.H.G.S.X.
0.051.90.93Zm.18532.1.A1_atCF637107hypothetical protein LOC100273655-7e-5At1g14290SBH2 (SPHINGOID BASE HYDROXYLASE 2)O.I.H.G.S.X.
0.041.50.94Zm.6196.1.A1_a_atBG265419hypothetical protein LOC100279988-7e-1At4g35880aspartyl protease family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4658.40.89ZmAffx.406.1.A1_x_atAI670258--4e-1At2g01505CLE16 (CLAVATA3/ESR-RELATED 16)O.I.H.G.S.X.
0.4048.50.88Zm.5896.1.A1_atCD996677sec20 family protein-3e+0At3g57500unknown proteinO.I.H.G.S.X.
0.4048.50.93Zm.15969.1.S1_atAW497912hypothetical protein LOC100194409-5e-31At1g62430ATCDS1O.I.H.G.S.X.
0.3336.00.92ZmAffx.55.1.A1_atAI665054--3e+0At1g25280AtTLP10 (TUBBY LIKE PROTEIN 10)O.I.H.G.S.X.
0.3336.00.95Zm.15575.1.A1_atCD448204--4e+0At5g60400unknown proteinO.I.H.G.S.X.
0.3131.60.94Zm.6207.2.A1_atBM07865160S ribosomal protein L15-2e-31At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.2928.10.95Zm.12525.1.A1_atBG266189--3e+0At3g54550unknown proteinO.I.H.G.S.X.
0.2014.20.94Zm.167.1.A1_atCF632910phosphoenolpyruvate carboxylase-1e-50At1g53310ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)O.I.H.G.S.X.
0.1912.80.97Zm.15516.1.S1_atCK787189hypothetical protein LOC100279678-2e+0At1g60140ATTPS10 (trehalose phosphate synthase)O.I.H.G.S.X.
0.1710.60.93Zm.7156.2.S1_atAF457947.1Hypothetical protein LOC100193362-1e-12At1g31812ACBP6 (acyl-CoA-binding protein 6)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.898.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM202320B73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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