Co-expression analysis

Gene ID	Zm.376.1.A1_at
Gene name	Hypoxically induced transcript 2
Homology with Arabidopsis	Similar to At1g05000: tyrosine specific protein phosphatase family protein (HF=2e-3)
Module size	6 genes
NF	0.09
%ile	5.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.94	Zm.376.1.A1_at	BM074849	Hypoxically induced transcript 2	-	2e-3	At1g05000	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.93	Zm.17357.1.S1_at	CK370769	-	-	5e+0	At1g29195	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	Zm.5732.1.A1_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.94	ZmAffx.238.1.A1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.93	Zm.18532.1.A1_at	CF637107	hypothetical protein LOC100273655	-	7e-5	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.94	Zm.6196.1.A1_a_at	BG265419	hypothetical protein LOC100279988	-	7e-1	At4g35880	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the wheat gene, Ta.25515.1.S1_at, orthologous to the query gene, Zm.376.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	Ta.25515.1.S1_at	At1g05000	-	-	5e-1	At1g05000	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.11117.1.A1_at	At1g05000	NAC domain transcription factor	-	1e+0	At5g16430	-	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.122104.1.S1_s_at	At1g05000	NAC domain transcription factor	-	1e-2	At1g69490	NAP (NAC-like, activated by AP3/PI)	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.12175.1.S1_at	At1g05000	-	-	5e+0	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.128682.1.S1_x_at	At1g05000	-	-	2e+0	At4g29190	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	TaAffx.128682.3.A1_at	At1g05000	-	-	1e+0	At2g05530	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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