Co-expression analysis

Gene ID Zm.376.1.A1_at
Gene name Hypoxically induced transcript 2
Homology with ArabidopsisSimilar to At1g05000: tyrosine specific protein phosphatase family protein (HF=2e-3)
Module size 6 genes
NF 0.09
%ile 5.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.94Zm.376.1.A1_atBM074849Hypoxically induced transcript 2-2e-3At1g05000tyrosine specific protein phosphatase family proteinO.I.H.G.S.X.
0.6381.10.93Zm.17357.1.S1_atCK370769--5e+0At1g29195unknown proteinO.I.H.G.S.X.
0.3641.30.94Zm.5732.1.A1_atAY108368.1hypothetical protein LOC100272253-1e+0At1g05780unknown proteinO.I.H.G.S.X.
0.072.90.94ZmAffx.238.1.A1_atAI670250--1e+1At3g62140unknown proteinO.I.H.G.S.X.
0.051.90.93Zm.18532.1.A1_atCF637107hypothetical protein LOC100273655-7e-5At1g14290SBH2 (SPHINGOID BASE HYDROXYLASE 2)O.I.H.G.S.X.
0.041.50.94Zm.6196.1.A1_a_atBG265419hypothetical protein LOC100279988-7e-1At4g35880aspartyl protease family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.898.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM202320B73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.90714.1.A1_at, orthologous to the query gene, Zm.376.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5380.5PtpAffx.90714.1.A1_atAt1g05000hypothetical protein-3e-8At4g03960tyrosine specific protein phosphatase family proteinO.I.H.G.S.X.
0.3863.7PtpAffx.119473.1.A1_atAt1g05000--7e-3At3g60590unknown proteinO.I.H.G.S.X.
0.3661.6PtpAffx.144848.1.S1_atAt1g05000hypothetical protein-8e-2At3g49780ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)O.I.H.G.S.X.
0.2747.1PtpAffx.21081.1.S1_atAt1g05000hypothetical protein-4e+0At3g17300-O.I.H.G.S.X.
0.2340.5PtpAffx.201432.1.S1_atAt1g05000--2e-42At5g24740-O.I.H.G.S.X.
0.2034.6PtpAffx.277.2.S1_atAt1g05000hypothetical protein-9e-1At1g19730ATTRX4O.I.H.G.S.X.
0.1830.8PtpAffx.24171.2.A1_atAt1g05000--2e-24At3g06180structural constituent of ribosomeO.I.H.G.S.X.
0.1626.9PtpAffx.214002.1.S1_atAt1g05000hypothetical protein-2e-1At3g02160DNA bindingO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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