Co-expression analysis

Gene ID	Zm.376.1.A1_at
Gene name	Hypoxically induced transcript 2
Homology with Arabidopsis	Similar to At1g05000: tyrosine specific protein phosphatase family protein (HF=2e-3)
Module size	6 genes
NF	0.09
%ile	5.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.94	Zm.376.1.A1_at	BM074849	Hypoxically induced transcript 2	-	2e-3	At1g05000	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.93	Zm.17357.1.S1_at	CK370769	-	-	5e+0	At1g29195	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	Zm.5732.1.A1_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.94	ZmAffx.238.1.A1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.93	Zm.18532.1.A1_at	CF637107	hypothetical protein LOC100273655	-	7e-5	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.94	Zm.6196.1.A1_a_at	BG265419	hypothetical protein LOC100279988	-	7e-1	At4g35880	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the barley gene, Contig7617_at, orthologous to the query gene, Zm.376.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	Contig7617_at	At1g05000	-	-	7e-4	At1g05000	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.84	94.3	Contig8610_at	At1g05000	-	-	3e-1	At4g13690	unknown protein	O.I.	H.G.	S.X.	Please select
0.84	94.3	Contig9287_at	At1g05000	-	-	3e-3	At3g47890	ubiquitin thiolesterase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig11340_at	At1g05000	-	-	1e-4	At4g00940	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig22309_at	At1g05000	-	-	3e-1	At5g46770	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	Contig3063_x_at	At1g05000	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig7616_at	At1g05000	-	-	1e+0	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig17690_at	At1g05000	-	-	4e+0	At5g39800	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig3545_at	At1g05000	-	-	3e-31	At2g04030	CR88	O.I.	H.G.	S.X.	Please select
0.69	85.5	Contig3624_at	At1g05000	-	-	6e-1	At3g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	HVSMEl0025J01f_s_at	At1g05000	-	-	1e+1	At5g65166	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig500_at	At1g05000	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.66	81.5	Contig3001_at	At1g05000	-	-	9e-12	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.66	81.5	Contig3350_at	At1g05000	-	-	5e-2	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig15730_at	At1g05000	-	-	5e+0	At1g11755	LEW1 (LEAF WILTING 1)	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig8246_at	At1g05000	-	-	2e-7	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	HF19N13r_s_at	At1g05000	-	-	3e+0	At1g24147	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	HY07K02u_at	At1g05000	-	-	3e+0	At1g03730	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	Contig5196_at	At1g05000	-	-	2e-24	At4g02120	CTP synthase, putative / UTP--ammonia ligase, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig14065_at	At1g05000	-	-	6e-8	At5g49770	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig22402_at	At1g05000	potassium transporter HAK4	-	2e-8	At3g02050	KUP3 (K+ UPTAKE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig6141_s_at	At1g05000	-	-	6e-1	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig3625_at	At1g05000	-	-	8e-32	At3g02630	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.49	63.7	Contig3903_x_at	At1g05000	hypothetical protein LOC732694	-	3e+0	At1g65150	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig1534_s_at	At1g05000	-	-	2e-5	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig8208_at	At1g05000	-	-	2e-7	At1g21460	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig3654_s_at	At1g05000	-	-	2e-36	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig12311_at	At1g05000	-	-	7e-1	At3g07090	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig8993_at	At1g05000	-	-	1e-2	At5g61430	ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig22208_at	At1g05000	-	-	2e+0	At1g02330	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig9143_at	At1g05000	-	-	2e+0	At2g26695	binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig3992_at	At1g05000	-	-	1e-40	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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