Co-expression analysis

Gene ID	Zm.3757.1.A1_at
Gene name	ferredoxin-3
Homology with Arabidopsis	Similar to At4g00670: DNA binding (HF=1e+0)
Module size	14 genes
NF	0.65
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.90	Zm.3757.1.A1_at	CB351276	ferredoxin-3	-	1e+0	At4g00670	DNA binding	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.92	Zm.6364.1.S1_at	T20372	-	-	8e-1	At2g22060	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.93	Zm.12152.1.S1_at	CK394699	hypothetical protein LOC100274505	-	1e-5	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.94	Zm.9088.1.A1_at	CB350848	-	-	1e+0	At2g06908	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.93	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.93	Zm.8383.1.A1_at	BM078678	PCO062666 protein	-	4e-1	At5g47960	ATRABA4C	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.94	Zm.15448.1.S1_at	CD448349	plastidic phosphate translocator-like protein1	-	4e-24	At4g32390	phosphate translocator-related	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.94	Zm.16502.5.A1_at	AI586439	hypothetical protein LOC100280237	-	1e-12	At5g61780	tudor domain-containing protein / nuclease family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.92	Zm.16892.1.A1_at	CO520304	calmodulin binding protein	-	2e-2	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.93	Zm.652.1.S1_at	AY029559.1	methyl binding domain	-	2e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.94	Zm.2940.1.A1_at	AW360572	-	-	4e-5	At1g56500	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.93	Zm.2165.1.A1_at	BM072875	hypothetical protein LOC100278701	-	6e+0	At5g25390	SHN2 (shine2)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.93	Zm.9745.1.A1_at	BM341408	-	-	2e+1	At5g24570	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.93	Zm.19028.1.S1_at	T18786	hypothetical protein LOC100192863	-	4e-2	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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