Co-expression analysis

Gene ID Zm.3748.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g11110: ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) (HF=4e-23)
Module size 6 genes
NF 0.29
%ile 25.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.90.95Zm.3748.1.S1_atCF624336--4e-23At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)O.I.H.G.S.X.
0.5674.40.96Zm.19112.1.A1_atCO517957--3e-4At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.4455.70.97Zm.8654.1.A1_atBM334074hypothetical protein LOC100280034-3e-2At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.4352.80.96Zm.2849.2.A1_atCF057194hypothetical protein LOC100193185-3e-24At1g06390GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1)O.I.H.G.S.X.
0.2115.50.97Zm.9580.1.A1_atBM332976hypothetical protein LOC100277774-6e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.115.30.96Zm.13732.1.S1_atAY106236.1transcriptional corepressor LEUNIG-3e-3At2g32700WD-40 repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.897.6GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320441protocol: mRNA - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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