Co-expression analysis

Gene ID	Zm.3731.2.A1_at
Gene name	hypothetical protein LOC100275405
Homology with Arabidopsis	Similar to At5g12310: zinc finger (C3HC4-type RING finger) family protein (HF=2e+1)
Module size	13 genes
NF	0.61
%ile	81.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.95	Zm.3731.2.A1_at	CK347337	hypothetical protein LOC100275405	-	2e+1	At5g12310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.96	Zm.18259.1.A1_s_at	CN844705	B12D protein	-	2e+1	At5g45775	60S ribosomal protein L11 (RPL11D)	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.96	ZmAffx.406.8.A1_at	AI670243	-	-	2e-1	At5g06870	PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	Zm.9208.1.S1_at	AY104924.1	dTDP-4-dehydrorhamnose reductase	-	4e-11	At1g63000	NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	Zm.15296.1.S1_at	BQ538198	hypothetical protein LOC100279215	-	2e-1	At1g06590	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.96	Zm.9916.1.A1_at	BM348997	-	-	3e-1	At5g51610	ribosomal protein L11 family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.4311.1.S1_at	AY105462.1	-	-	1e-31	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.9751.1.A1_at	BM378815	hypothetical protein LOC100193184	-	4e-1	At1g72220	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.11923.1.S1_at	BM381883	hypothetical protein LOC100191414	-	6e-1	At4g03415	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.15011.1.A1_at	BG841178	-	-	5e+0	At5g60945	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	ZmAffx.1128.1.S1_at	AW330583	-	-	8e-7	At4g24800	MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.96	Zm.6930.1.A1_at	CK370820	hypothetical protein LOC100193485	-	3e-27	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.96	Zm.8839.1.A1_at	BM266982	hypothetical protein LOC100276545	-	9e-2	At3g27350	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
8.2	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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