Co-expression analysis

Gene ID Zm.3707.1.A1_at
Gene name vacuolar cation/proton exchanger 2
Homology with ArabidopsisSimilar to At3g13320: CAX2 (CATION EXCHANGER 2) (HF=1e-4)
Module size 6 genes
NF 0.62
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.98Zm.3707.1.A1_atAY107773.1vacuolar cation/proton exchanger 2-1e-4At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.7792.10.99Zm.13202.1.A1_atCA403491hypothetical protein LOC100273129-1e-8At1g56590clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.6785.80.98Zm.6439.2.A1_atAI881500eucaryotic initiation factor7-7e-14At5g35620LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)O.I.H.G.S.X.
0.6179.50.98Zm.737.2.A1_atAI746142--4e-6At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.4658.40.98Zm.2602.1.S1_atAY109922.1hypothetical protein LOC100217277-1e-2At5g243403'-5' exonuclease domain-containing proteinO.I.H.G.S.X.
0.3641.30.98Zm.5729.1.A1_atAI637125peptidoglycan binding domain containing protein-3e-23At4g13670PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.20.97Zm.19237.1.A1_atCA402877hypothetical protein LOC100216898-2e-1At3g49010ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)O.I.H.G.S.X.
0.6785.80.98Zm.2699.1.A1_atAW066891hypothetical protein LOC100193918-1e+1At5g16170unknown proteinO.I.H.G.S.X.
0.6179.50.96Zm.13887.1.S1_x_atAF099411.1hypothetical protein LOC100274036 /// R2R3MYB-domain protein-9e-1At5g01200myb family transcription factorO.I.H.G.S.X.
0.6077.80.97Zm.10423.1.S1_atCN844467fatty acid desaturase8-6e-14At5g05580FAD8 (FATTY ACID DESATURASE 8)O.I.H.G.S.X.
0.6077.80.98Zm.4549.1.A1_atCK144436hypothetical protein LOC100272569-1e-6At5g55530C2 domain-containing proteinO.I.H.G.S.X.
0.5674.40.97Zm.13406.1.A1_atAF457944.1--3e+1At5g57540xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.5369.10.98Zm.522.1.S1_atAF200531.1cellulose synthase7-1e-38At2g21770CESA9 (CELLULOSE SYNTHASE A9)O.I.H.G.S.X.
0.5369.10.96Zm.5753.1.A1_atAW066540smr domain containing protein-7e-1At1g50390fructokinase-relatedO.I.H.G.S.X.
0.5065.70.97Zm.17620.1.S1_atCK368321--4e+0At5g59860RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5065.70.98Zm.15744.1.A1_atCD445730--7e-1At1g70209unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.12951.1.S1_atCD444057hypothetical protein LOC100274682-3e+0At5g13450ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putativeO.I.H.G.S.X.
0.5065.70.98Zm.18338.1.A1_atBM074037hypothetical protein LOC100193344-4e+0At2g27410unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.17172.1.A1_atAI664919--2e+0At1g55675unknown proteinO.I.H.G.S.X.
0.4759.90.97ZmAffx.722.1.A1_atAI739911--7e-19At5g0296040S ribosomal protein S23 (RPS23B)O.I.H.G.S.X.
0.4759.90.97Zm.7809.1.A1_atBM079983hypothetical protein LOC100273081-2e-8At1g47270AtTLP6 (TUBBY LIKE PROTEIN 6)O.I.H.G.S.X.
0.4759.90.98Zm.14622.2.S1_atCO534180ubiquinone biosynthesis methyltransferase COQ5-1e-5At5g57300UbiE/COQ5 methyltransferase family proteinO.I.H.G.S.X.
0.4658.40.96Zm.15254.1.A1_atBM347970--4e+0At4g24110unknown proteinO.I.H.G.S.X.
0.4658.40.97Zm.4401.1.A1_atAY108702.1YGL010w-like protein-9e+0At5g59360unknown proteinO.I.H.G.S.X.
0.4455.70.97ZmAffx.213.1.A1_atAI670221--3e+0At2g32050cell cycle control protein-relatedO.I.H.G.S.X.
0.4455.70.98Zm.19149.1.A1_atCO526377--2e-1At3g44020thylakoid lumenal P17.1 proteinO.I.H.G.S.X.
0.4352.80.98Zm.17179.1.A1_atCK368850--9e-14At1g27740basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4048.50.97ZmAffx.889.1.A1_atAI770841--8e-7At2g40650pre-mRNA splicing factor PRP38 family proteinO.I.H.G.S.X.
0.4048.50.97Zm.6583.1.A1_atAY111761.1hypothetical protein LOC100273289-2e-3At3g45000VPS24.2O.I.H.G.S.X.
0.4048.50.98Zm.19158.2.S1_atBM073998thioredoxin F-type-3e-11At5g16400ATF2O.I.H.G.S.X.
0.4048.50.98Zm.2685.1.S1_atAF271384.1indole-3-glycerol phosphate lyase1-5e-2At3g54640TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)O.I.H.G.S.X.
0.4048.50.98Zm.17915.1.A1_atCF038577--7e-103Atmg00830-O.I.H.G.S.X.
0.4048.50.98Zm.1994.1.S1_atCD442162hypothetical protein LOC100193300-6e+0At5g6307040S ribosomal protein S15, putativeO.I.H.G.S.X.
0.4048.50.98Zm.10393.1.S1_atAI676981--2e+0At5g11425unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.10123.1.S1_atBM380717heat- and acid-stable phosphoprotein-3e-14At5g46020unknown proteinO.I.H.G.S.X.
0.3945.60.96Zm.4036.1.A1_atCD994340tyrosine specific protein phosphatase family protein-1e-11At1g05000tyrosine specific protein phosphatase family proteinO.I.H.G.S.X.
0.3844.20.97Zm.12431.1.S1_atAY106853.1hypothetical protein LOC100217105-4e+0At4g18400unknown proteinO.I.H.G.S.X.
0.3844.20.98Zm.2906.1.S1_atAY110115.1somatic embryogenesis receptor-like kinase2-2e-51At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.3844.20.96Zm.44.1.S1_atD49475.1glutamic dehydrogenase1-9e-44At3g03910GDH3 (GLUTAMATE DEHYDROGENASE 3)O.I.H.G.S.X.
0.3844.20.97Zm.2713.2.S1_a_atAI881541--1e-30At5g60790ATGCN1O.I.H.G.S.X.
0.3641.30.96Zm.10446.1.A1_atBQ485330--8e-14At4g14950unknown proteinO.I.H.G.S.X.
0.3641.30.96Zm.9768.1.A1_atBM338514hypothetical protein LOC100273687-3e-2At1g29730ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.3641.30.98Zm.11598.1.A1_atBM379212--1e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.3538.90.95Zm.2271.1.A1_atCA402854--8e+0At5g22390unknown proteinO.I.H.G.S.X.
0.3538.90.96ZmAffx.898.1.S1_atAI770889--8e-1At3g15280unknown proteinO.I.H.G.S.X.
0.3538.90.96ZmAffx.491.1.A1_atAI691520--9e+0At5g11412nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3538.90.98Zm.19138.1.S1_atCO525589hypothetical protein LOC100277966-5e-1At2g46300-O.I.H.G.S.X.
0.3336.00.96Zm.17977.1.A1_atCK827616--5e-1At3g0963060S ribosomal protein L4/L1 (RPL4A)O.I.H.G.S.X.
0.3336.00.96Zm.3607.1.A1_atAW017627IAA30 - auxin-responsive Aux/IAA family member-1e-14At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.3336.00.97Zm.8996.1.A1_atAY109834.1--5e-2At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.H.G.S.X.
0.3336.00.98Zm.16757.1.A1_atBM380106--3e-2At3g03660WOX11 (WUSCHEL related homeobox 11)O.I.H.G.S.X.
0.3336.00.98Zm.15604.1.S1_atCD433931subtilisin-chymotrypsin inhibitor CI-1B-5e+0At5g27440unknown proteinO.I.H.G.S.X.
0.3336.00.98ZmAffx.89.1.S1_atAI665353--1e+1At5g20560beta-1,3-glucanase, putativeO.I.H.G.S.X.
0.3233.40.96Zm.18208.1.A1_atBM338077--4e+0At3g45245-O.I.H.G.S.X.
0.3233.40.96Zm.5083.1.A1_a_atAY103727.1--3e-22At5g22060ATJ2O.I.H.G.S.X.
0.3233.40.97Zm.857.1.S1_atCF624024--1e-1At5g50150unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.599.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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