| Gene ID | Zm.3707.1.A1_at |
| Gene name | vacuolar cation/proton exchanger 2 |
| Homology with Arabidopsis | Similar to At3g13320: CAX2 (CATION EXCHANGER 2) (HF=1e-4) |
| Module size | 6 genes |
| NF | 0.62 |
| %ile | 83.6 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.80 | 94.0 | 0.98 | Zm.3707.1.A1_at | AY107773.1 | vacuolar cation/proton exchanger 2 | - | 1e-4 | At3g13320 | CAX2 (CATION EXCHANGER 2) | O.I. | H.G. | S.X. | |
| 0.77 | 92.1 | 0.99 | Zm.13202.1.A1_at | CA403491 | hypothetical protein LOC100273129 | - | 1e-8 | At1g56590 | clathrin adaptor complexes medium subunit family protein | O.I. | H.G. | S.X. | |
| 0.67 | 85.8 | 0.98 | Zm.6439.2.A1_at | AI881500 | eucaryotic initiation factor7 | - | 7e-14 | At5g35620 | LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) | O.I. | H.G. | S.X. | |
| 0.61 | 79.5 | 0.98 | Zm.737.2.A1_at | AI746142 | - | - | 4e-6 | At5g60360 | AALP (Arabidopsis aleurain-like protease) | O.I. | H.G. | S.X. | |
| 0.46 | 58.4 | 0.98 | Zm.2602.1.S1_at | AY109922.1 | hypothetical protein LOC100217277 | - | 1e-2 | At5g24340 | 3'-5' exonuclease domain-containing protein | O.I. | H.G. | S.X. | |
| 0.36 | 41.3 | 0.98 | Zm.5729.1.A1_at | AI637125 | peptidoglycan binding domain containing protein | - | 3e-23 | At4g13670 | PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5) | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 15.5 | 99.0 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 13.6 | 98.8 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 12.5 | 98.7 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 11.0 | 98.5 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.9 | 98.5 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.4 | 98.4 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.4 | 98.4 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.0 | 98.4 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.0 | 98.2 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.2 | 91.3 | GSM320457 | protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.67 | 87.2 | Os03g0397400 | At3g13320 | - | Low affinity calcium transporter CAX2 (Fragment) | 2e-5 | At1g55720 | ATCAX6 | O.I. | H.G. | S.X. | |
| 0.50 | 68.0 | Os04g0132500 | At3g13320 | - | Protein kinase domain containing protein | 5e-4 | At3g24240 | leucine-rich repeat transmembrane protein kinase, putative | O.I. | H.G. | S.X. | |
| 0.50 | 68.0 | Os04g0128900 | At3g13320 | - | Flavin monoxygenase-like protein floozy | 3e-1 | At5g11320 | YUC4 (YUCCA4) | O.I. | H.G. | S.X. | |
| 0.40 | 51.1 | Os02g0555700 | At3g13320 | - | Chaperone protein dnaJ (40 kDa heat shockchaperone protein) (HSP40) | 6e-5 | At1g77020 | DNAJ heat shock N-terminal domain-containing protein | O.I. | H.G. | S.X. | |
| 0.40 | 51.1 | Os06g0660200 | At3g13320 | - | Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6) | 1e-15 | At1g70940 | PIN3 (PIN-FORMED 3) | O.I. | H.G. | S.X. | |
| 0.11 | 6.5 | Os01g0680900 | At3g13320 | - | DOMON domain containing protein | 8e-1 | At2g16210 | transcriptional factor B3 family protein | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
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