Co-expression analysis

Gene ID Zm.3707.1.A1_at
Gene name vacuolar cation/proton exchanger 2
Homology with ArabidopsisSimilar to At3g13320: CAX2 (CATION EXCHANGER 2) (HF=1e-4)
Module size 6 genes
NF 0.62
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.98Zm.3707.1.A1_atAY107773.1vacuolar cation/proton exchanger 2-1e-4At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.7792.10.99Zm.13202.1.A1_atCA403491hypothetical protein LOC100273129-1e-8At1g56590clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.6785.80.98Zm.6439.2.A1_atAI881500eucaryotic initiation factor7-7e-14At5g35620LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)O.I.H.G.S.X.
0.6179.50.98Zm.737.2.A1_atAI746142--4e-6At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.4658.40.98Zm.2602.1.S1_atAY109922.1hypothetical protein LOC100217277-1e-2At5g243403'-5' exonuclease domain-containing proteinO.I.H.G.S.X.
0.3641.30.98Zm.5729.1.A1_atAI637125peptidoglycan binding domain containing protein-3e-23At4g13670PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.599.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.16198.1.S1_at, orthologous to the query gene, Zm.3707.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8191.7Gma.16198.1.S1_atAt3g13320--5e-6At1g55720ATCAX6O.I.H.G.S.X.
0.5071.7GmaAffx.68953.1.S1_atAt3g13320--8e-46At5g50000protein kinase, putativeO.I.H.G.S.X.
0.4968.3GmaAffx.54705.1.S1_atAt3g13320--7e+0At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.4766.6GmaAffx.9211.1.S1_atAt3g13320--6e+0At5g4562026S proteasome regulatory subunit, putative (RPN9)O.I.H.G.S.X.
0.4665.5Gma.2064.1.S1_atAt3g13320--5e-67At4g18710BIN2 (BRASSINOSTEROID-INSENSITIVE 2)O.I.H.G.S.X.
0.4259.3Gma.3957.1.S1_atAt3g13320--5e-11At4g24520ATR1 (ARABIDOPSIS P450 REDUCTASE 1)O.I.H.G.S.X.
0.4158.1Gma.1066.1.S1_atAt3g13320--4e-67At3g13670protein kinase family proteinO.I.H.G.S.X.
0.4057.1GmaAffx.82598.2.S1_atAt3g13320--8e-8At5g59830unknown proteinO.I.H.G.S.X.
0.3751.7GmaAffx.92769.1.S1_atAt3g13320--1e-75At3g19760eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.3751.7GmaAffx.91054.1.S1_atAt3g13320--2e-8At1g04230unknown proteinO.I.H.G.S.X.
0.3751.7GmaAffx.82078.1.S1_atAt3g13320--1e-27At3g26420ATRZ-1AO.I.H.G.S.X.
0.3751.7Gma.10927.1.S1_atAt3g13320--2e-7At5g45160root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.3548.6GmaAffx.61604.1.S1_atAt3g13320--1e-9At3g51370protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3447.2Gma.7733.2.S1_a_atAt3g13320--6e-16At3g55070-O.I.H.G.S.X.
0.3243.7GmaAffx.1301.9.S1_atAt3g13320--1e-8At5g35200epsin N-terminal homology (ENTH) domain-containing proteinO.I.H.G.S.X.
0.2939.0Gma.10798.1.S1_atAt3g13320--2e-158At1g10430PP2A-2O.I.H.G.S.X.
0.2939.0GmaAffx.3678.1.S1_atAt3g13320--6e+0At5g46570BSK2 (BR-SIGNALING KINASE 2)O.I.H.G.S.X.
0.2735.7Gma.8087.2.S1_a_atAt3g13320--1e+0At1g26690emp24/gp25L/p24 family proteinO.I.H.G.S.X.
0.2735.7GmaAffx.85246.2.S1_atAt3g13320--2e-9At5g14250COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)O.I.H.G.S.X.
0.2532.6Gma.3862.1.A1_atAt3g13320--6e-12At5g02800protein kinase family proteinO.I.H.G.S.X.
0.2126.6GmaAffx.55210.2.S1_atAt3g13320--3e-32At2g43070protease-associated (PA) domain-containing proteinO.I.H.G.S.X.
0.1923.7Gma.5720.1.S1_s_atAt3g13320--4e-5At1g51200zinc finger (AN1-like) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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