CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3707.1.A1_at

Gene name vacuolar cation/proton exchanger 2
Homology with Arabidopsis Similar to At3g13320: CAX2 (CATION EXCHANGER 2) (HF=1e-4)

Module size 6 genes

NF 0.62

%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.0 0.98 Zm.3707.1.A1_at AY107773.1 vacuolar cation/proton exchanger 2 - 1e-4 At3g13320 CAX2 (CATION EXCHANGER 2) O.I. H.G. S.X.
0.77 92.1 0.99 Zm.13202.1.A1_at CA403491 hypothetical protein LOC100273129 - 1e-8 At1g56590 clathrin adaptor complexes medium subunit family protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.6439.2.A1_at AI881500 eucaryotic initiation factor7 - 7e-14 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) O.I. H.G. S.X.
0.61 79.5 0.98 Zm.737.2.A1_at AI746142 - - 4e-6 At5g60360 AALP (Arabidopsis aleurain-like protease) O.I. H.G. S.X.
0.46 58.4 0.98 Zm.2602.1.S1_at AY109922.1 hypothetical protein LOC100217277 - 1e-2 At5g24340 3'-5' exonuclease domain-containing protein O.I. H.G. S.X.
0.36 41.3 0.98 Zm.5729.1.A1_at AI637125 peptidoglycan binding domain containing protein - 3e-23 At4g13670 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.5 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5 98.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0 98.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9 98.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0 98.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2 91.3 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g13320, orthologous to the query gene, Zm.3707.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.38 46.7 At3g13320 820532 CAX2 (CATION EXCHANGER 2) low affinity calcium antiporter CAX2 O.I. H.G. S.X.
0.40 50.8 At2g05260 815074 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;P O.I. H.G. S.X.
0.40 50.8 At2g20010 816520 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.31 33.8 At1g17500 838324 ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV O.I. H.G. S.X.
0.14 6.8 At1g21370 838736 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPO O.I. H.G. S.X.
0.10 3.4 At3g51460 824309 RHD4 (ROOT HAIR DEFECTIVE4) Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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