Co-expression analysis

Gene ID Zm.3702.1.S1_at
Gene name geranylgeranyl hydrogenase
Homology with ArabidopsisSimilar to At1g74470: geranylgeranyl reductase (HF=6e-5)
Module size 8 genes
NF 0.53
%ile 69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6179.50.97Zm.3702.1.S1_atAY104414.1geranylgeranyl hydrogenase-6e-5At1g74470geranylgeranyl reductaseO.I.H.G.S.X.
0.6481.70.97Zm.19091.1.S1_atCO526991fiber protein Fb2-2e+0At3g06820mov34 family proteinO.I.H.G.S.X.
0.6381.10.97Zm.14718.1.S1_atCF009620--3e-21At4g39800MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)O.I.H.G.S.X.
0.5674.40.98Zm.4006.1.A1_atBQ539204hypothetical protein LOC100216950-2e+0At4g22530embryo-abundant protein-relatedO.I.H.G.S.X.
0.5469.80.97Zm.17856.1.A1_atCF01574660S ribosomal protein L38-2e-24At3g5954060S ribosomal protein L38 (RPL38B)O.I.H.G.S.X.
0.4455.70.97Zm.16803.1.A1_atAI73982260S ribosomal protein L34-4e-7At1g2688060S ribosomal protein L34 (RPL34A)O.I.H.G.S.X.
0.4149.70.97Zm.605.1.S1_a_atAF326492.1plasma membrane integral protein ZmPIP2-2-4e-27At2g37180RD28 (RESPONSIVE TO DESICCATION 28)O.I.H.G.S.X.
0.3844.20.97Zm.6418.1.S1_atAY108322.1hypothetical protein LOC100216693-2e-1At3g44580unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM320463protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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