Co-expression analysis

Gene ID	Zm.3701.1.S1_at
Gene name	cysteine protease 1
Homology with Arabidopsis	Similar to At5g43060: cysteine proteinase, putative / thiol protease, putative (HF=1e-2)
Module size	6 genes
NF	0.75
%ile	95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.94	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.95	Zm.370.1.S1_at	AF023159.1	starch synthase DULL1	-	1e-21	At1g11720	ATSS3 (starch synthase 3)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.94	Zm.3410.1.A1_at	AB035645.1	ferredoxin	-	1e-42	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.93	Zm.3284.1.A1_at	BM952816	-	-	7e-1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.95	Zm.4005.1.A1_at	BE345363	-	-	4e+0	At1g68140	-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.93	Zm.10467.1.S1_at	CA826991	hypothetical protein LOC100274742	-	1e+0	At2g27580	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
9.9	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig4091_at, orthologous to the query gene, Zm.3701.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	47.1	Contig4091_at	At5g43060	-	-	3e-13	At1g47128	RD21 (responsive to dehydration 21)	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig7830_s_at	At5g43060	-	-	3e-22	At2g02860	SUT2 (SUCROSE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig5733_at	At5g43060	-	-	2e+0	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig7506_at	At5g43060	-	-	2e-39	At3g23310	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	HK06B02r_s_at	At5g43060	-	-	1e-5	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig23565_at	At5g43060	-	-	2e+0	At4g14819	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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