Co-expression analysis

Gene ID Zm.3701.1.S1_at
Gene name cysteine protease 1
Homology with ArabidopsisSimilar to At5g43060: cysteine proteinase, putative / thiol protease, putative (HF=1e-2)
Module size 6 genes
NF 0.75
%ile 95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.94Zm.3701.1.S1_atCF636730cysteine protease 1-1e-2At5g43060cysteine proteinase, putative / thiol protease, putativeO.I.H.G.S.X.
0.9199.00.95Zm.370.1.S1_atAF023159.1starch synthase DULL1-1e-21At1g11720ATSS3 (starch synthase 3)O.I.H.G.S.X.
0.7389.90.94Zm.3410.1.A1_atAB035645.1ferredoxin-1e-42At5g66190FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)O.I.H.G.S.X.
0.6179.50.93Zm.3284.1.A1_atBM952816--7e-1At3g01850ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putativeO.I.H.G.S.X.
0.5571.60.95Zm.4005.1.A1_atBE345363--4e+0At1g68140-O.I.H.G.S.X.
0.4658.40.93Zm.10467.1.S1_atCA826991hypothetical protein LOC100274742-1e+0At2g27580zinc finger (AN1-like) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.799.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM205369Mo17 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
9.998.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL90Contig1_at, orthologous to the query gene, Zm.3701.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8392.5PsAffx.CL90Contig1_atAt5g43060--4e-3At4g16190cysteine proteinase, putativeO.I.H.G.S.X.
0.7388.9GmaAffx.53629.1.S1_s_atAt5g43060--4e+0At2g35460harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.6786.1PsAffx.CL12Contig2_atAt5g43060--1e+1At4g22520protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.6080.7PsAffx.CL2Contig6_atAt5g43060--2e+1At5g51090unknown proteinO.I.H.G.S.X.
0.5576.3PsAffx.C98000060_s_atAt5g43060--5e-1At1g50050pathogenesis-related protein, putativeO.I.H.G.S.X.
0.5576.3GmaAffx.44517.1.A1_s_atAt5g43060--7e-1At1g20440COR47 (COLD-REGULATED 47)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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