Co-expression analysis

Gene ID	Zm.3699.5.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g09995: unknown protein (HF=3e-2)
Module size	6 genes
NF	0.71
%ile	92.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.98	Zm.3699.5.A1_at	AY107222.1	-	-	3e-2	At5g09995	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.3633.2.S1_x_at	CF634876	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.11605.1.A1_at	BM379262	-	-	4e+0	At4g11930	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.16178.1.A1_s_at	BM347672	hypothetical protein LOC100275193 /// hypothetical protein LOC100276703	-	3e-5	At4g39235	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.98	Zm.4385.1.S1_at	BQ487047	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.8233.1.A1_at	AI947630	-	-	1e-2	At4g31580	SRZ-22	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.2	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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