Co-expression analysis

Gene ID	Zm.3656.1.A1_at
Gene name	Wound responsive protein-like
Homology with Arabidopsis	Similar to At1g75380: wound-responsive protein-related (HF=2e-1)
Module size	31 genes
NF	0.32
%ile	31.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	96.4	0.95	Zm.3656.1.A1_at	AY106382.1	Wound responsive protein-like	-	2e-1	At1g75380	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.96	Zm.2879.1.S1_at	AF527609.1	chromdomain-containing protein CRD101	-	2e-1	At3g30220	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.2876.1.A1_at	AW256253	-	-	5e-1	At1g09860	ATPUP16	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.11150.1.A1_at	CO518263	hypothetical protein LOC100279642	-	2e+0	At5g61110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.6478.1.S1_at	AI692059	-	-	4e-21	At1g09800	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.8995.1.A1_at	AY107473.1	glutaryl-CoA dehydrogenase	-	2e-7	At3g51840	ACX4 (ACYL-COA OXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.14501.4.A1_at	CK849957	Hypothetical protein LOC100191411	-	3e-46	At5g22060	ATJ2	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.6258.1.A1_at	CF626264	PP2Ac-5 - Phosphatase 2A isoform 5 belonging to family 2	-	2e-21	At2g42500	PP2A-4	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.8935.1.A1_at	BM381068	hypothetical protein LOC100276386	-	7e+0	At3g58470	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.743.1.S1_at	BG321150	hypothetical protein LOC100275158	-	5e-2	At5g65360	histone H3	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.98	Zm.16977.1.S1_at	AB102956.1	histidine kinase 2	-	4e-20	At1g27320	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.12795.1.A1_at	BG267654	-	-	1e+0	At1g57590	carboxylesterase	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.5083.4.A1_x_at	AI600767	-	-	3e-17	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.6118.1.A1_a_at	CK986014	hypothetical protein LOC100276070 /// hypothetical protein LOC100278913	-	6e+0	At5g38895	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.3829.1.S1_at	BM335816	-	-	1e-15	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.16878.1.A1_a_at	CF650510	hypothetical protein LOC100191585	-	3e+0	At4g35390	AGF1 (AT-hook protein of GA feedback 1)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.34.5.A1_at	AI734535	-	-	4e-2	At2g36950	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.13991.1.S1_at	AW424608	peroxidase 1	-	1e-2	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	Zm.14501.3.A1_at	AY107741.1	NAC domain-containing protein 68	-	2e-15	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.17822.1.A1_at	CO521652	hypothetical protein LOC100193034	-	6e+0	At4g14104	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.7969.1.S1_a_at	CA399140	-	-	1e-25	At1g55090	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.7131.1.A1_at	AY108795.1	hypothetical protein LOC100191916	-	1e-9	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.12837.1.A1_at	AY106006.1	-	-	2e+0	At1g72170	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.5910.1.S1_at	AB018590.1	GR2b protein	-	2e+0	At4g31660	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.98	Zm.10745.1.A1_at	BQ539349	hypothetical protein LOC100272654	-	4e-3	At4g25990	CIL	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.1645.1.A1_at	AW573472	hypothetical protein LOC100276209	-	5e+0	At1g64561	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.15873.1.A1_at	BM339859	IDP1704 protein	-	8e-5	At1g63180	UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.14501.1.A1_at	CA404906	hypothetical protein LOC100191411	-	4e-50	At5g22060	ATJ2	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.6184.1.A1_at	AY105953.1	-	-	7e-5	At3g01540	DRH1 (DEAD BOX RNA HELICASE 1)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.16537.1.S1_at	AY103617.1	40S ribosomal protein SA	-	4e-70	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.6259.1.A1_at	AI691171	transferase, transferring glycosyl groups	-	2e+0	At4g23490	fringe-related protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.5	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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