CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3633.2.S1_x_at

Gene name APx1 - Cytosolic Ascorbate Peroxidase
Homology with Arabidopsis Similar to At1g07890: APX1 (ascorbate peroxidase 1) (HF=3e-28)

Module size 6 genes

NF 0.73

%ile 94.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 79.5 0.98 Zm.3633.2.S1_x_at CF634876 APx1 - Cytosolic Ascorbate Peroxidase - 3e-28 At1g07890 APX1 (ascorbate peroxidase 1) O.I. H.G. S.X.
0.91 99.0 0.98 Zm.11605.1.A1_at BM379262 - - 4e+0 At4g11930 unknown protein O.I. H.G. S.X.
0.71 88.2 0.98 Zm.4385.1.S1_at BQ487047 small nuclear ribonucleoprotein-associated protein B - 3e-15 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.
0.67 85.8 0.98 Zm.3699.5.A1_at AY107222.1 - - 3e-2 At5g09995 unknown protein O.I. H.G. S.X.
0.60 77.8 0.98 Zm.4132.1.A1_at CO529833 hypothetical protein LOC100276765 - 4e-14 At1g16520 unknown protein O.I. H.G. S.X.
0.53 69.1 0.98 Zm.8233.1.A1_at AI947630 - - 1e-2 At4g31580 SRZ-22 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 93.8 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.6 92.9 GSM290553 WS1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.1 90.8 GSM290554 WS2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.0 90.2 GSM290556 CCR mutant M2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.0 90.2 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.0 90.2 GSM253277 ZM_8d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
1.8 88.9 GSM206288 Upper pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
1.8 88.9 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
1.8 88.9 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
1.8 88.9 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the barley gene, Contig1728_at, orthologous to the query gene, Zm.3633.2.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 61.0 Contig1728_at At1g07890 - - 1e-14 At1g07890 APX1 (ascorbate peroxidase 1) O.I. H.G. S.X.
0.36 47.1 Contig23742_at At1g07890 - - 2e-1 At1g05270 TraB family protein O.I. H.G. S.X.
0.29 35.5 Contig10503_at At1g07890 - - 1e-2 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) O.I. H.G. S.X.
0.22 24.2 Contig3232_at At1g07890 - - 1e-37 At2g44350 ATCS O.I. H.G. S.X.
0.14 12.9 Contig13113_at At1g07890 - - 1e-2 At5g02760 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.
0.12 10.4 Contig9134_at At1g07890 - - 4e-22 At4g32600 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.07 5.8 Contig11840_s_at At1g07890 - - 3e-2 At2g25720 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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