Co-expression analysis

Gene ID Zm.3611.1.S1_at
Gene name choline-phosphate cytidylyltransferase B
Homology with ArabidopsisSimilar to At4g15130: catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase (HF=2e-22)
Module size 6 genes
NF 0.52
%ile 66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.3611.1.S1_atCA403298choline-phosphate cytidylyltransferase B-2e-22At4g15130catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseO.I.H.G.S.X.
0.5674.40.97Zm.10865.1.A1_atCF638037hypothetical protein LOC100275271-1e-6At2g44090-O.I.H.G.S.X.
0.4455.70.96Zm.14052.1.A1_atCF036019hypothetical protein LOC100272508-3e-17At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.
0.4251.30.97Zm.15826.1.A1_atCF602424Histone H4-2e-31At5g59690histone H4O.I.H.G.S.X.
0.3641.30.97Zm.4618.1.A1_atAW066311pre-mRNA-splicing factor ISY1-4e-7At3g18790-O.I.H.G.S.X.
0.3641.30.97Zm.3961.1.S1_atCK370362hypothetical protein LOC100272531-3e-7At1g70290ATTPS8O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.80.97Zm.1047.1.S1_atCB381142hypothetical protein LOC100277178-1e+0At1g10865-O.I.H.G.S.X.
0.5976.10.96Zm.17589.1.A1_atCK144401protein binding protein-3e-2At1g77830zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5065.70.97Zm.264.2.A1_x_atCF012670acetyl-coenzyme A carboxylase-8e+0At5g02890transferase family proteinO.I.H.G.S.X.
0.4658.40.96Zm.5399.1.A1_atBM338134--2e-11At4g29130HXK1 (HEXOKINASE 1)O.I.H.G.S.X.
0.4658.40.97Zm.24.2.S1_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinO.I.H.G.S.X.
0.4251.30.94Zm.688.1.A1_atAJ250985.1outer cell layer3-8e-9At4g00730ANL2 (ANTHOCYANINLESS 2)O.I.H.G.S.X.
0.4048.50.94Zm.19180.1.S1_atCO523146gamma-secretase subunit APH-1B-1e-11At2g31440protein bindingO.I.H.G.S.X.
0.4048.50.94Zm.17670.1.A1_atCF637959--6e+0At5g59080unknown proteinO.I.H.G.S.X.
0.4048.50.95Zm.6838.1.A1_atCF035294--4e-1Atcg00440-O.I.H.G.S.X.
0.3641.30.96Zm.7038.1.A1_atAY107850.1hypothetical protein LOC100192898-1e+0At5g24170-O.I.H.G.S.X.
0.3336.00.96Zm.9515.1.S1_atAY433815.1salt-induced MAP kinase 1-5e-24At4g01370ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)O.I.H.G.S.X.
0.3233.40.96Zm.15976.1.A1_atCD964820hypothetical protein LOC100191871-1e+0At1g28630unknown proteinO.I.H.G.S.X.
0.2928.10.94Zm.3968.1.A1_atAY112244.1hypothetical protein LOC100278255-5e+0At1g60625RALFL6 (RALF-LIKE 6)O.I.H.G.S.X.
0.2928.10.95Zm.3132.1.S1_atAY112211.1--1e-10At5g16040regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.2928.10.95Zm.5323.1.A1_atCK827563hypothetical protein LOC100194352-2e+0At4g13968-O.I.H.G.S.X.
0.2928.10.95ZmAffx.1146.1.S1_atAW400130--3e+0At5g51860MADS-box protein (AGL72)O.I.H.G.S.X.
0.2928.10.97Zm.18347.1.A1_atBM078855hypothetical protein LOC100192822-1e-11At1g21480exostosin family proteinO.I.H.G.S.X.
0.2724.60.96Zm.4578.2.S1_atCO521260hypothetical protein LOC100279630 /// MADS1-2e-4At2g22540SVP (SHORT VEGETATIVE PHASE)O.I.H.G.S.X.
0.2622.70.93Zm.17858.1.A1_atAY111541.1hypothetical protein AY111541-2e+0At3g53620AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)O.I.H.G.S.X.
0.2521.30.93Zm.17857.1.A1_s_atAW091230heat shock protein1-5e+0At5g57000unknown proteinO.I.H.G.S.X.
0.2521.30.96Zm.4908.1.S1_atBG316794IDP527 protein-5e-58At4g37930SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.499.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.398.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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