Co-expression analysis

Gene ID	Zm.3611.1.S1_at
Gene name	choline-phosphate cytidylyltransferase B
Homology with Arabidopsis	Similar to At4g15130: catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase (HF=2e-22)
Module size	6 genes
NF	0.52
%ile	66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.3611.1.S1_at	CA403298	choline-phosphate cytidylyltransferase B	-	2e-22	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.10865.1.A1_at	CF638037	hypothetical protein LOC100275271	-	1e-6	At2g44090	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.14052.1.A1_at	CF036019	hypothetical protein LOC100272508	-	3e-17	At2g22400	NOL1/NOP2/sun family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.15826.1.A1_at	CF602424	Histone H4	-	2e-31	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.4618.1.A1_at	AW066311	pre-mRNA-splicing factor ISY1	-	4e-7	At3g18790	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.3961.1.S1_at	CK370362	hypothetical protein LOC100272531	-	3e-7	At1g70290	ATTPS8	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.4	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1607327_at, orthologous to the query gene, Zm.3611.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	1607327_at	At4g15130	hypothetical protein LOC100267395	-	8e-67	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.91	98.8	1617603_at	At4g15130	hypothetical protein LOC100262919	-	5e-9	At5g61970	signal recognition particle-related / SRP-related	O.I.	H.G.	S.X.	Please select
0.83	94.6	1610551_at	At4g15130	-	-	3e-27	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1609445_at	At4g15130	hypothetical protein LOC100242218	-	6e-69	At4g29160	SNF7.1	O.I.	H.G.	S.X.	Please select
0.60	81.9	1607046_at	At4g15130	hypothetical protein LOC100265342	-	4e-10	At3g19080	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1621695_at	At4g15130	hypothetical protein LOC100261060	-	2e-24	At1g68070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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