Co-expression analysis

Gene ID Zm.3611.1.S1_at
Gene name choline-phosphate cytidylyltransferase B
Homology with ArabidopsisSimilar to At4g15130: catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase (HF=2e-22)
Module size 6 genes
NF 0.52
%ile 66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.3611.1.S1_atCA403298choline-phosphate cytidylyltransferase B-2e-22At4g15130catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseO.I.H.G.S.X.
0.5674.40.97Zm.10865.1.A1_atCF638037hypothetical protein LOC100275271-1e-6At2g44090-O.I.H.G.S.X.
0.4455.70.96Zm.14052.1.A1_atCF036019hypothetical protein LOC100272508-3e-17At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.
0.4251.30.97Zm.15826.1.A1_atCF602424Histone H4-2e-31At5g59690histone H4O.I.H.G.S.X.
0.3641.30.97Zm.4618.1.A1_atAW066311pre-mRNA-splicing factor ISY1-4e-7At3g18790-O.I.H.G.S.X.
0.3641.30.97Zm.3961.1.S1_atCK370362hypothetical protein LOC100272531-3e-7At1g70290ATTPS8O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.499.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.398.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os10g0578900, orthologous to the query gene, Zm.3611.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8596.1Os10g0578900At4g15130-Cholinephosphate cytidylyltransferase3e-15At2g32260cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putativeO.I.H.G.S.X.
0.4660.9Os12g0571900At4g15130-Suppressor of forked domain containing protein2e-15At1g17760CSTF77O.I.H.G.S.X.
0.4558.8Os02g0829400At4g15130-Conserved hypothetical protein1e-1At3g56030-O.I.H.G.S.X.
0.4458.1Os02g0580700At4g15130-Conserved hypothetical protein3e-1At1g66850protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3846.9Os10g0363100At4g15130-Glycosyltransferase QUASIMODO1 (EC 2.4.1.-)3e-20At4g38270GAUT3 (Galacturonosyltransferase 3)O.I.H.G.S.X.
0.3745.0Os10g0564100At4g15130-SOH1 family protein4e-17At5g19910SOH1 family proteinO.I.H.G.S.X.
0.3644.0Os03g0185300At4g15130-Hypothetical protein2e+0At3g23650protein kinase-relatedO.I.H.G.S.X.
0.3541.7Os01g0689800At4g15130-Esterase/lipase/thioesterase domain containingprotein3e-28At5g38220hydrolaseO.I.H.G.S.X.
0.3440.0Os02g0201900At4g15130-Helicase, C-terminal domain containing protein5e-6At3g02065DEAD/DEAH box helicase family proteinO.I.H.G.S.X.
0.3338.8Os12g0580300At4g15130-TATA-binding protein TBP23e-67At1g55520TBP2 (TATA BINDING PROTEIN 2)O.I.H.G.S.X.
0.3338.8Os07g0471100At4g15130-Nuclear protein SET domain containing protein2e-1At2g35430zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.3338.8Os05g0185700At4g15130-Ribokinase family protein9e-1At5g11260HY5 (ELONGATED HYPOCOTYL 5)O.I.H.G.S.X.
0.3032.7Os11g0521900At4g15130-CTD phosphatase-like 32e-10At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)O.I.H.G.S.X.
0.3032.7Os09g0448100At4g15130-Cyclin-like F-box domain containing protein1e+0At5g01790unknown proteinO.I.H.G.S.X.
0.2931.1Os02g0823800At4g15130--1e-1At2g42680MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)O.I.H.G.S.X.
0.2931.1Os02g0477700At4g15130-Hypothetical protein4e-7At1g65580FRA3 (FRAGILE FIBER3)O.I.H.G.S.X.
0.2727.5Os02g0107600At4g15130-Conserved hypothetical protein3e-2At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.2625.6Os12g0538300At4g15130-Dor1-like protein family protein6e-21At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedO.I.H.G.S.X.
0.2625.6Os03g0130800At4g15130-Bromodomain containing protein2e+0At5g11740AGP15 (ARABINOGALACTAN PROTEIN 15)O.I.H.G.S.X.
0.2524.1Os11g0143500At4g15130-L-Galactono-1,4-lactone dehydrogenase3e-13At3g47930ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)O.I.H.G.S.X.
0.2524.1Os03g0587100At4g15130-Conserved hypothetical protein8e-1At3g04370PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)O.I.H.G.S.X.
0.2422.4Os04g0284100At4g15130-Conserved hypothetical protein7e-1At2g37630AS1 (ASYMMETRIC LEAVES 1)O.I.H.G.S.X.
0.2422.4Os05g0290300At4g15130-Hypothetical protein6e+0At4g17200F-box family proteinO.I.H.G.S.X.
0.2321.2Os03g0747600At4g15130-GCN5-related N-acetyltransferase domain containingprotein2e-12At5g36670PHD finger family proteinO.I.H.G.S.X.
0.2321.2Os03g0105700At4g15130-Protein of unknown function DUF296 domaincontaining protein3e+0At5g44570unknown proteinO.I.H.G.S.X.
0.2117.9Os06g0724300At4g15130-Protein of unknown function DUF616 family protein3e-16At4g38500unknown proteinO.I.H.G.S.X.
0.2016.5Os05g0446500At4g15130-Hypothetical protein5e-1At5g37230zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1915.1Os04g0544900At4g15130-Alg9-like mannosyltransferase family protein2e-26At1g02145transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.1813.7Os03g0826400At4g15130-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein7e-10At3g47120RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1712.6Os02g0782200At4g15130-NOT2/NOT3/NOT5 family protein6e-9At1g07705transcription regulatorO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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