Co-expression analysis

Gene ID	Zm.3573.1.A1_at
Gene name	peroxidase 54
Homology with Arabidopsis	Similar to At5g06720: peroxidase, putative (HF=3e-3)
Module size	6 genes
NF	0.54
%ile	71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.3573.1.A1_at	CF629925	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.3376.1.A1_at	AY104431.1	hypothetical protein LOC100273263	-	5e-2	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.6905.1.A1_a_at	AF461814.1	histone1a	-	6e-1	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5819.1.S1_at	AI649779	-	-	6e-4	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.6116.1.A1_at	CK347339	-	-	9e-16	At3g02320	RNA binding / tRNA (guanine-N2-)-methyltransferase	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.99	RPTR-Zm-M57289-1_s_at	RPTR-Zm-M57289-1	-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.1	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1609321_at, orthologous to the query gene, Zm.3573.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1609321_at	At5g06720	hypothetical protein LOC100241916	-	7e-7	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1616929_at	At5g06720	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1621243_at	At5g06720	hypothetical protein LOC100257019	-	1e+0	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1617912_at	At5g06720	hypothetical protein LOC100259655	-	3e-5	At3g53990	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	1609603_s_at	At5g06720	hypothetical protein LOC100241051	-	1e-71	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1622320_at	At5g06720	-	-	2e+1	At5g05113	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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