CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3573.1.A1_at

Gene name peroxidase 54
Homology with Arabidopsis Similar to At5g06720: peroxidase, putative (HF=3e-3)

Module size 6 genes

NF 0.54

%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 Zm.3573.1.A1_at CF629925 peroxidase 54 - 3e-3 At5g06720 peroxidase, putative O.I. H.G. S.X.
0.60 77.8 0.98 Zm.3376.1.A1_at AY104431.1 hypothetical protein LOC100273263 - 5e-2 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) O.I. H.G. S.X.
0.50 65.7 0.98 Zm.6905.1.A1_a_at AF461814.1 histone1a - 6e-1 At4g04620 ATG8B (autophagy 8b) O.I. H.G. S.X.
0.50 65.7 0.98 Zm.5819.1.S1_at AI649779 - - 6e-4 At1g29900 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) O.I. H.G. S.X.
0.50 65.7 0.99 Zm.6116.1.A1_at CK347339 - - 9e-16 At3g02320 RNA binding / tRNA (guanine-N2-)-methyltransferase O.I. H.G. S.X.
0.26 22.7 0.99 RPTR-Zm-M57289-1_s_at RPTR-Zm-M57289-1 - - - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.1 98.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2 98.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0 94.0 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g06720, orthologous to the query gene, Zm.3573.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.57 73.8 At5g06720 830561 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV O.I. H.G. S.X.
0.40 50.8 At5g05340 830416 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM O.I. H.G. S.X.
0.40 50.8 At5g52390 835315 photoassimilate-responsive protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.33 38.1 At1g16950 838266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.33 38.1 At1g68320 843161 MYB62 (myb domain protein 62) putative transcription factor: R2R3-MYB transcription family O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage