Co-expression analysis

Gene ID	Zm.3571.1.S1_at
Gene name	Hypothetical protein LOC100193516
Homology with Arabidopsis	Similar to At4g17030: ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) (HF=4e+0)
Module size	6 genes
NF	0.63
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.95	Zm.3571.1.S1_at	BG265645	Hypothetical protein LOC100193516	-	4e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.3570.1.A1_at	BG840178	-	-	6e-1	At1g54260	histone H1/H5 family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.3569.1.A1_at	CO518726	hypothetical protein LOC100280101	-	5e+0	At3g55600	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.853.1.A1_at	AI395965	hypothetical protein LOC100276013	-	2e-12	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.6703.1.A1_at	CA398710	hypothetical protein LOC100273224	-	1e+0	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.94	Zm.3572.1.A1_at	BG873875	harpin-induced protein	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the barley gene, Contig17687_at, orthologous to the query gene, Zm.3571.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig17687_at	At4g17030	-	-	5e-4	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig10268_at	At4g17030	-	-	3e-16	At3g53130	LUT1 (LUTEIN DEFICIENT 1)	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig5452_at	At4g17030	-	-	9e-22	At2g47250	RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig8085_at	At4g17030	-	-	2e-1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig25993_at	At4g17030	-	-	6e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig8825_at	At4g17030	-	-	2e+0	Atmg00920	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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