Co-expression analysis

Gene ID	Zm.3569.1.A1_at
Gene name	hypothetical protein LOC100280101
Homology with Arabidopsis	Similar to At3g55600: - (HF=5e+0)
Module size	6 genes
NF	0.63
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.95	Zm.3569.1.A1_at	CO518726	hypothetical protein LOC100280101	-	5e+0	At3g55600	-	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.3570.1.A1_at	BG840178	-	-	6e-1	At1g54260	histone H1/H5 family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.95	Zm.3571.1.S1_at	BG265645	Hypothetical protein LOC100193516	-	4e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.853.1.A1_at	AI395965	hypothetical protein LOC100276013	-	2e-12	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.6703.1.A1_at	CA398710	hypothetical protein LOC100273224	-	1e+0	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.94	Zm.3572.1.A1_at	BG873875	harpin-induced protein	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.1	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
11.8	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.26655.1.S1_at, orthologous to the query gene, Zm.3569.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	Ta.26655.1.S1_at	At3g55600	-	-	4e-1	Atmg00740	-	O.I.	H.G.	S.X.	Please select
0.59	79.8	TaAffx.116081.1.S1_x_at	At3g55600	-	-	1e+0	At5g07540	GRP16 (GLYCINE-RICH PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.45	65.2	TaAffx.30193.1.S1_s_at	At3g55600	-	-	4e+0	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.105993.1.S1_at	At3g55600	-	-	3e-1	At1g25054	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.87047.1.S1_at	At3g55600	-	-	3e-1	At5g13890	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.59462.1.S1_at	At3g55600	-	-	7e-2	At2g42040	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.79532.1.S1_at	At3g55600	-	-	3e+1	At4g02360	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.54172.1.S1_at	At3g55600	-	-	2e+1	At3g47980	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.85941.1.S1_at	At3g55600	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.56232.1.S1_at	At3g55600	-	-	4e+0	At4g39970	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.92997.1.S1_at	At3g55600	-	-	4e+0	At3g56290	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.73323.1.S1_at	At3g55600	-	-	3e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.110759.1.S1_at	At3g55600	-	-	1e+0	At4g35820	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.99246.2.S1_at	At3g55600	-	-	1e+0	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.110167.1.S1_at	At3g55600	-	-	4e+0	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.7070.3.S1_x_at	At3g55600	-	-	3e+0	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.53587.2.S1_at	At3g55600	-	-	7e-2	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.30655.1.A1_at	At3g55600	ibZm protein	-	1e+0	At2g20450	60S ribosomal protein L14 (RPL14A)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.66028.1.S1_at	At3g55600	-	-	8e+0	At3g54826	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.6759.2.S1_at	At3g55600	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.25395.2.S1_at	At3g55600	-	-	2e+1	At4g34180	cyclase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.111603.1.S1_at	At3g55600	-	-	1e+0	At4g30140	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.118620.1.S1_at	At3g55600	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.78517.1.S1_at	At3g55600	-	-	4e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.50928.1.S1_at	At3g55600	-	-	4e+0	At3g44430	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.51594.1.S1_at	At3g55600	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.109175.2.S1_x_at	At3g55600	-	-	1e+0	At4g29020	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.82721.1.S1_at	At3g55600	-	-	3e+1	At4g20780	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.85817.1.S1_at	At3g55600	-	-	4e+0	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.38217.1.S1_x_at	At3g55600	-	-	7e+0	At5g11690	ATTIM17-3	O.I.	H.G.	S.X.	Please select
0.11	12.4	Ta.11853.2.S1_x_at	At3g55600	-	-	4e+0	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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