Co-expression analysis

Gene ID Zm.3569.1.A1_at
Gene name hypothetical protein LOC100280101
Homology with ArabidopsisSimilar to At3g55600: - (HF=5e+0)
Module size 6 genes
NF 0.63
%ile 84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.95Zm.3569.1.A1_atCO518726hypothetical protein LOC100280101-5e+0At3g55600-O.I.H.G.S.X.
0.7389.90.96Zm.3570.1.A1_atBG840178--6e-1At1g54260histone H1/H5 family proteinO.I.H.G.S.X.
0.7188.20.95Zm.3571.1.S1_atBG265645Hypothetical protein LOC100193516-4e+0At4g17030ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)O.I.H.G.S.X.
0.6785.80.95Zm.853.1.A1_atAI395965hypothetical protein LOC100276013-2e-12At4g01150unknown proteinO.I.H.G.S.X.
0.5775.10.95Zm.6703.1.A1_atCA398710hypothetical protein LOC100273224-1e+0At2g01120ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)O.I.H.G.S.X.
0.2521.30.94Zm.3572.1.A1_atBG873875harpin-induced protein-2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.199.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.599.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.398.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
11.898.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0702000, orthologous to the query gene, Zm.3569.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os01g0702000At3g55600-Conserved hypothetical protein4e-5At1g75380wound-responsive protein-relatedO.I.H.G.S.X.
0.8395.8Os03g0679700At3g55600-Thiamine biosynthesis protein thiC3e-125At2g29630THIC (ThiaminC)O.I.H.G.S.X.
0.6787.2Os01g0272800At3g55600-Conserved hypothetical protein6e-1At3g58710WRKY69O.I.H.G.S.X.
0.4458.1Os08g0139100At3g55600-DAG protein, chloroplast precursor7e-44At1g11430plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.3846.9Os08g0425200At3g55600-Conserved hypothetical protein1e-1At4g11870unknown proteinO.I.H.G.S.X.
0.3338.8Os02g0539600At3g55600-Myb, DNA-binding domain containing protein3e-12At5g63420emb2746 (embryo defective 2746)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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