Co-expression analysis

Gene ID	Zm.3546.1.S1_at
Gene name	F-box domain containing protein
Homology with Arabidopsis	Similar to At5g10780: - (HF=3e+0)
Module size	7 genes
NF	0.48
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.96	Zm.3546.1.S1_at	CA405247	F-box domain containing protein	-	3e+0	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.4975.1.A1_at	AI691922	-	-	9e-1	At3g61900	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.5746.1.A1_at	CK986017	-	-	4e-1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.4669.1.S1_at	AI737897	Growth-regulating factor 9-like	-	5e-5	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.12834.1.A1_at	AI491262	hypothetical protein LOC100272301	-	1e+1	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.10756.1.S1_at	CD975109	-	-	2e+0	At1g58460	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.3657.1.A1_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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