Co-expression analysis

Gene ID	Zm.3536.1.A1_at
Gene name	glucan endo-1,3-beta-glucosidase 4
Homology with Arabidopsis	Similar to At2g18050: HIS1-3 (HISTONE H1-3) (HF=3e+0)
Module size	27 genes
NF	0.46
%ile	55.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	0.94	Zm.3536.1.A1_at	BM340706	glucan endo-1,3-beta-glucosidase 4	-	3e+0	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.96	Zm.2374.1.A1_at	AI734567	hypothetical protein LOC100192983	-	3e+0	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.2716.1.A1_at	CD440659	-	-	3e+0	At4g28700	AMT1	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.6665.1.S1_at	AY104195.1	hypothetical protein LOC100274698	-	3e-7	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.3999.1.S1_at	CF024332	hypothetical protein LOC100276811	-	3e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.96	Zm.2953.1.S1_at	CF054623	hypothetical protein LOC100276099	-	3e-6	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.6822.2.A1_at	CO518852	-	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.6644.2.A1_at	AY109212.1	-	-	4e+0	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.15852.2.A1_at	AY108720.1	-	-	1e-41	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.96	Zm.19340.1.A1_at	CO530664	uracil phosphoribosyltransferase	-	1e+0	At4g30180	transcription factor/ transcription regulator	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.9565.1.A1_at	BM381516	beta-expansin 3	-	6e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.10827.1.S1_at	BQ619419	-	-	8e-2	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.19300.1.S1_at	CO522732	DNA repair protein RAD51	-	3e+0	At2g45280	ATRAD51C	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.7611.2.A1_at	BM268818	-	-	2e-3	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.5048.6.A1_a_at	BM380925	hypothetical protein LOC100279926 /// endoplasmin	-	3e-36	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.96	Zm.6754.1.A1_at	AI396158	hypothetical protein LOC100279965	-	4e-2	At4g36530	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.18469.1.S1_at	BM378527	oxidoreductase	-	2e-7	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.18485.1.S1_at	AY104422.1	DNA binding protein	-	4e-8	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.8972.1.S1_at	CD435957	hypothetical protein LOC100217237	-	7e-17	At3g54320	WRI1 (WRINKLED 1)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.2181.1.S1_at	BF727788	-	-	9e-1	At2g10602	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.4335.3.A1_at	AY109325.1	-	-	1e-3	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.3583.2.S1_at	AY105229.1	Hypothetical protein LOC100191673	-	2e+0	At1g14980	CPN10 (CHAPERONIN 10)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.1129.1.A1_at	BE510577	-	-	1e+0	At1g80730	ZFP1 (ZINC-FINGER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.13226.2.A1_at	CF012904	40S ribosomal protein S9	-	1e-41	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.14272.2.A1_at	D10622.1	corn cystatin I	-	6e-7	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.1719.1.S1_at	AW400223	-	-	7e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	Zm.12993.1.A1_at	CF632679	hypothetical protein LOC100273862	-	3e-2	At3g04380	SUVR4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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