Co-expression analysis

Gene ID	Zm.3518.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g22000: PROPEP6 (Elicitor peptide 6 precursor) (HF=1e+0)
Module size	6 genes
NF	0.64
%ile	85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	Zm.3518.1.A1_at	BM337627	-	-	1e+0	At2g22000	PROPEP6 (Elicitor peptide 6 precursor)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	Zm.6588.1.A1_at	BM080221	hypothetical protein LOC100192010	-	5e-23	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.2393.1.A1_at	BM268973	hypothetical protein LOC100273606	-	1e-1	At1g36060	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.95	Zm.11730.1.S1_at	BM380273	hypothetical protein LOC100272845	-	2e-26	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.95	Zm.6567.1.A1_at	BM072999	-	-	2e+0	At5g41030	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.93	Zm.18877.1.A1_at	CO529651	protein phosphatase 2C	-	3e-1	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.8	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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