CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3498.1.A1_a_at

Gene name metallothionein1
Homology with Arabidopsis Similar to At5g64690: neurofilament triplet H protein-related (HF=2e+0)

Module size 6 genes

NF 0.41

%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 0.93 Zm.3498.1.A1_a_at CK367906 metallothionein1 - 2e+0 At5g64690 neurofilament triplet H protein-related O.I. H.G. S.X.
0.60 77.8 0.93 Zm.2768.1.A1_at AW067159 Hypothetical protein LOC100193535 - 1e+0 At5g04760 myb family transcription factor O.I. H.G. S.X.
0.55 71.6 0.92 Zm.13483.1.S1_at CO528023 Hypothetical protein LOC100192840 - 2e+0 At3g29970 germination protein-related O.I. H.G. S.X.
0.33 36.0 0.95 Zm.12936.1.A1_at AY108987.1 - - 7e-1 At3g21338 unknown protein O.I. H.G. S.X.
0.30 29.8 0.92 Zm.1079.4.S1_x_at AY109373.1 - - 2e-2 At5g14740 CA2 (CARBONIC ANHYDRASE 2) O.I. H.G. S.X.
0.21 15.5 0.93 Zm.12511.1.S1_at AW062063 hypothetical protein LOC100276976 - 5e+0 At5g53110 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.92	Zm.17767.1.A1_at	CK371577	hypothetical protein LOC100191424	-	4e-1	At2g14365	LCR84 (Low-molecular-weight cysteine-rich 84)	O.I.	H.G.	S.X.
0.53	69.1	0.91	Zm.4605.1.A1_at	AI795719	-	-	1e-4	At1g64350	SEH1H	O.I.	H.G.	S.X.
0.50	65.7	0.84	Zm.9447.1.A1_at	BM268960	-	-	2e+1	At4g18070	unknown protein	O.I.	H.G.	S.X.
0.46	58.4	0.88	Zm.782.1.A1_at	CA404412	hypothetical protein LOC100273031	-	4e-30	At2g27680	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.46	58.4	0.89	Zm.5668.1.S1_at	CO525286	hypothetical protein LOC100193892	-	7e-4	At2g43030	ribosomal protein L3 family protein	O.I.	H.G.	S.X.
0.44	55.7	0.88	Zm.4619.3.A1_at	AI737367	-	-	8e-1	At3g53470	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.92	Zm.17361.1.S1_at	CK370908	-	-	5e-19	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	O.I.	H.G.	S.X.
0.43	52.8	0.94	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	O.I.	H.G.	S.X.
0.40	48.5	0.90	Zm.17754.1.A1_at	CK826899	-	-	2e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.
0.38	44.2	0.91	ZmAffx.61.1.S1_at	AI665105	-	-	9e-13	At5g62840	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.
0.38	44.2	0.88	Zm.18133.1.S1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	O.I.	H.G.	S.X.
0.35	38.9	0.91	Zm.2887.1.A1_at	CF041808	hypothetical protein LOC100193083	-	6e-10	At1g26940	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.
0.33	36.0	0.93	Zm.13661.1.A1_at	AY107142.1	-	-	2e+0	At4g25710	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.33	36.0	0.93	Zm.19240.1.A1_at	CF624777	DNA binding protein	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.33	36.0	0.94	Zm.2986.1.A1_at	AF056326.1	low phytic acid1	-	4e-105	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	O.I.	H.G.	S.X.
0.31	31.6	0.95	Zm.678.1.S1_at	AF302187.1	sucrose export defective1	-	4e-15	At4g32770	VTE1 (VITAMIN E DEFICIENT 1)	O.I.	H.G.	S.X.
0.29	28.1	0.93	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	O.I.	H.G.	S.X.
0.26	22.7	0.88	Zm.4140.1.S1_at	BE552528	hypothetical protein LOC100191980	-	2e-17	At1g69790	protein kinase, putative	O.I.	H.G.	S.X.
0.25	21.3	0.94	Zm.15790.1.S1_at	AY109814.1	SWIb domain-containing protein	-	1e-1	At4g26810	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 94.9 GSM253278 ZM_8d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.2 94.5 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM253276 ZM_8d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.9 93.8 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6 92.9 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5 92.6 GSM206317 Right pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.5 92.6 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5 92.6 GSM253265 ZM_4d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
2.4 92.2 GSM253275 ZM_8d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
2.3 91.7 GSM206329 Right pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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