CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3498.1.A1_a_at

Gene name metallothionein1
Homology with Arabidopsis Similar to At5g64690: neurofilament triplet H protein-related (HF=2e+0)

Module size 6 genes

NF 0.41

%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 0.93 Zm.3498.1.A1_a_at CK367906 metallothionein1 - 2e+0 At5g64690 neurofilament triplet H protein-related O.I. H.G. S.X.
0.60 77.8 0.93 Zm.2768.1.A1_at AW067159 Hypothetical protein LOC100193535 - 1e+0 At5g04760 myb family transcription factor O.I. H.G. S.X.
0.55 71.6 0.92 Zm.13483.1.S1_at CO528023 Hypothetical protein LOC100192840 - 2e+0 At3g29970 germination protein-related O.I. H.G. S.X.
0.33 36.0 0.95 Zm.12936.1.A1_at AY108987.1 - - 7e-1 At3g21338 unknown protein O.I. H.G. S.X.
0.30 29.8 0.92 Zm.1079.4.S1_x_at AY109373.1 - - 2e-2 At5g14740 CA2 (CARBONIC ANHYDRASE 2) O.I. H.G. S.X.
0.21 15.5 0.93 Zm.12511.1.S1_at AW062063 hypothetical protein LOC100276976 - 5e+0 At5g53110 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 94.9 GSM253278 ZM_8d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.2 94.5 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM253276 ZM_8d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.9 93.8 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6 92.9 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5 92.6 GSM206317 Right pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.5 92.6 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5 92.6 GSM253265 ZM_4d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
2.4 92.2 GSM253275 ZM_8d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
2.3 91.7 GSM206329 Right pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.224301.1.S1_at, orthologous to the query gene, Zm.3498.1.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 84.2 PtpAffx.224301.1.S1_at At5g64690 hypothetical protein - 2e+0 At5g63690 - O.I. H.G. S.X.
0.04 6.9 PtpAffx.7175.1.A1_at At5g64690 - - 4e-1 At4g02871 unknown protein O.I. H.G. S.X.
0.03 5.2 PtpAffx.221770.1.S1_at At5g64690 aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase - 3e-3 At2g10450 14-3-3 protein, putative / grf15, putative O.I. H.G. S.X.
0.01 2.2 PtpAffx.18183.1.A1_at At5g64690 - - 1e-1 At1g28570 GDSL-motif lipase, putative O.I. H.G. S.X.
0.01 2.2 PtpAffx.214064.1.S1_at At5g64690 - - 6e-13 At5g26030 FC1 (ferrochelatase 1) O.I. H.G. S.X.
0.00 0.4 PtpAffx.208846.1.S1_x_at At5g64690 anthranilate synthase, beta subunit, ASB1 - 6e-28 At1g25155 anthranilate synthase beta subunit, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage