Co-expression analysis

Gene ID	Zm.3498.1.A1_a_at
Gene name	metallothionein1
Homology with Arabidopsis	Similar to At5g64690: neurofilament triplet H protein-related (HF=2e+0)
Module size	6 genes
NF	0.41
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.93	Zm.3498.1.A1_a_at	CK367906	metallothionein1	-	2e+0	At5g64690	neurofilament triplet H protein-related	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.93	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.92	Zm.13483.1.S1_at	CO528023	Hypothetical protein LOC100192840	-	2e+0	At3g29970	germination protein-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.92	Zm.1079.4.S1_x_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.93	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.9	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.2	94.5	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.9	93.8	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.3	91.7	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL409Contig1_s_at, orthologous to the query gene, Zm.3498.1.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	PsAffx.CL409Contig1_s_at	At5g64690	-	-	7e-2	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.C106000046_s_at	At5g64690	-	-	2e-1	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.C98000060_s_at	At5g64690	-	-	5e-1	At1g50050	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.44517.1.A1_s_at	At5g64690	-	-	7e-1	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.46	65.5	PsAffx.CL96Contig1_at	At5g64690	-	-	8e-1	At1g23800	ALDH2B7	O.I.	H.G.	S.X.	Please select
0.30	40.4	PsAffx.CL434Contig1_at	At5g64690	-	-	8e+0	At3g05975	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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