Co-expression analysis

Gene ID Zm.3498.1.A1_a_at
Gene name metallothionein1
Homology with ArabidopsisSimilar to At5g64690: neurofilament triplet H protein-related (HF=2e+0)
Module size 6 genes
NF 0.41
%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.93Zm.3498.1.A1_a_atCK367906metallothionein1-2e+0At5g64690neurofilament triplet H protein-relatedO.I.H.G.S.X.
0.6077.80.93Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.5571.60.92Zm.13483.1.S1_atCO528023Hypothetical protein LOC100192840-2e+0At3g29970germination protein-relatedO.I.H.G.S.X.
0.3336.00.95Zm.12936.1.A1_atAY108987.1--7e-1At3g21338unknown proteinO.I.H.G.S.X.
0.3029.80.92Zm.1079.4.S1_x_atAY109373.1--2e-2At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.2115.50.93Zm.12511.1.S1_atAW062063hypothetical protein LOC100276976-5e+0At5g53110-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.9GSM253278ZM_8d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.294.5GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM253276ZM_8d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
2.993.8GSM320444protocol: mRNA - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM206317Right pulvinus control total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
2.592.6GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM253265ZM_4d_SG200_3inf_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
2.492.2GSM253275ZM_8d_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
2.391.7GSM206329Right pulvinus control polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g64690, orthologous to the query gene, Zm.3498.1.A1_a_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.4457.2At5g64690836590neurofilament triplet H protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.7788.0At1g43630840947unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.7184.2At3g22650821836CEG (CEGENDUO)F:molecular_function unknown;P:response to auxin stimulus, lateral root formation;C:cellular_component unknown;POO.I.H.G.S.X.
0.6781.6At2g10970815562invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6176.7At3g02440821154unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBO.I.H.G.S.X.
0.6176.7At2g45610819169hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BPOFMAVO.I.H.G.S.X.
0.5873.8At1g16360838205LEM3 (ligand-effect modulator 3) family protein / CDC50 family proteinF:unknown;P:biological_process unknown;C:membrane;MOFPO.I.H.G.S.X.
0.5166.3At1g51260841549LPAT3ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS]O.I.H.G.S.X.
0.4761.2At3g12160820393RABA4D (RAB GTPASE HOMOLOG A4D)Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.O.I.H.G.S.X.
0.4355.3At1g51410841566cinnamyl-alcohol dehydrogenase, putative (CAD)similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.H.G.S.X.
0.3948.4At2g19010816418GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.H.G.S.X.
0.3948.4At2g13570815843NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MOPFO.I.H.G.S.X.
0.3846.7At2g20430816562RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC7 and RIC8 (subfamily group II). Gene is expressed predominantly in inflorescence and flower tissue.O.I.H.G.S.X.
0.3745.0At5g47470834797nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BOPAMO.I.H.G.S.X.
0.3643.6At2g13620815847ATCHX15member of Putative Na+/H+ antiporter familyO.I.H.G.S.X.
0.3338.1At1g11250837666SYP125 (SYNTAXIN OF PLANTS 125)member of SYP12 Gene FamilyO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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