Co-expression analysis

Gene ID Zm.3441.1.A1_at
Gene name hypothetical protein LOC100193908
Homology with ArabidopsisSimilar to At4g33467: unknown protein (HF=4e-1)
Module size 6 genes
NF 0.27
%ile 22.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.99Zm.3441.1.A1_atCN844939hypothetical protein LOC100193908-4e-1At4g33467unknown proteinO.I.H.G.S.X.
0.5571.60.99ZmAffx.912.1.S1_atAI770956--5e-2At4g01580transcriptional factor B3 family proteinO.I.H.G.S.X.
0.3131.60.99ZmAffx.877.1.S1_atAI770795--8e-1At5g16240acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.3131.60.99Zm.18808.1.A1_atCO526738--1e+0At1g02840SR1O.I.H.G.S.X.
0.136.80.99ZmAffx.151.1.S1_atAI667841--2e-10At1g50140ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.125.90.99Zm.17818.1.A1_atCK145213--6e+0At5g52470FIB1 (FIBRILLARIN 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.80.99Zm.9797.1.A1_atBM341227--4e+0At3g58180PBS lyase HEAT-like repeat-containing proteinO.I.H.G.S.X.
0.5775.10.99Zm.33.1.S1_x_atM12144.1alpha zein 19kDa D2-7e-1At1g18265unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.1919.1.A1_atCA401282--9e-1At2g28100ATFUC1 (alpha-L-fucosidase 1)O.I.H.G.S.X.
0.4658.40.99Zm.10778.2.A1_atBQ539551--3e-6At2g22475GEM (GL2-EXPRESSION MODULATOR)O.I.H.G.S.X.
0.4048.50.99Zm.9950.1.A1_atBM350675--5e+0At4g28020unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.8468.1.A1_s_atBM074266--6e+0At3g45480zinc ion bindingO.I.H.G.S.X.
0.3336.00.99Zm.3843.1.S1_atAW054469hypothetical protein LOC100216880-2e+0At4g19720glycosyl hydrolase family 18 proteinO.I.H.G.S.X.
0.3131.60.98Zm.16978.1.A1_atCF646243hypothetical protein LOC100275636-1e+0At4g10800-O.I.H.G.S.X.
0.2928.10.99Zm.2079.1.S1_atAW261425--5e-1At1g21790-O.I.H.G.S.X.
0.2724.60.98ZmAffx.1091.1.S1_atAW066092hypothetical protein LOC100278249-3e+0At5g44300dormancy/auxin associated family proteinO.I.H.G.S.X.
0.2724.60.99Zm.9157.1.A1_atCB351321molybdenum cofactor synthesis protein 2 large subunit-7e+0At1g50760unknown proteinO.I.H.G.S.X.
0.2724.60.99Zm.8233.3.S1_x_atBQ294345hypothetical protein LOC100194283-5e-7At4g31580SRZ-22O.I.H.G.S.X.
0.2521.30.98Zm.13849.1.S1_atCD962380ATP10 protein-2e+0At1g08220-O.I.H.G.S.X.
0.2521.30.98Zm.1271.1.S1_s_atBE238697--3e+0At5g23035-O.I.H.G.S.X.
0.2521.30.99ZmAffx.190.2.S1_atAI668410--8e-1At3g54480SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)O.I.H.G.S.X.
0.2521.30.99Zm.16261.1.A1_atCA400028--2e-3At1g79920ATP bindingO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.797.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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