Co-expression analysis

Gene ID Zm.3441.1.A1_at
Gene name hypothetical protein LOC100193908
Homology with ArabidopsisSimilar to At4g33467: unknown protein (HF=4e-1)
Module size 6 genes
NF 0.27
%ile 22.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.99Zm.3441.1.A1_atCN844939hypothetical protein LOC100193908-4e-1At4g33467unknown proteinO.I.H.G.S.X.
0.5571.60.99ZmAffx.912.1.S1_atAI770956--5e-2At4g01580transcriptional factor B3 family proteinO.I.H.G.S.X.
0.3131.60.99ZmAffx.877.1.S1_atAI770795--8e-1At5g16240acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.3131.60.99Zm.18808.1.A1_atCO526738--1e+0At1g02840SR1O.I.H.G.S.X.
0.136.80.99ZmAffx.151.1.S1_atAI667841--2e-10At1g50140ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.125.90.99Zm.17818.1.A1_atCK145213--6e+0At5g52470FIB1 (FIBRILLARIN 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.797.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2016.1.S1_a_at, orthologous to the query gene, Zm.3441.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5784.2Ptp.2016.1.S1_a_atAt4g33467hypothetical protein-1e-38At3g48930EMB1080 (embryo defective 1080)O.I.H.G.S.X.
0.6086.0Ptp.6777.2.S1_s_atAt4g33467hypothetical protein-3e-15At5g2806040S ribosomal protein S24 (RPS24B)O.I.H.G.S.X.
0.5784.2Ptp.798.1.A1_x_atAt4g33467--1e-28At3g4991060S ribosomal protein L26 (RPL26A)O.I.H.G.S.X.
0.5582.2Ptp.1464.2.S1_x_atAt4g33467--3e-40At2g4761060S ribosomal protein L7A (RPL7aA)O.I.H.G.S.X.
0.4875.4Ptp.2448.1.S1_atAt4g33467hypothetical protein-5e-57At3g2483060S ribosomal protein L13A (RPL13aB)O.I.H.G.S.X.
0.4774.6Ptp.5621.1.S1_s_atAt4g33467hypothetical protein-2e-89At3g48930EMB1080 (embryo defective 1080)O.I.H.G.S.X.
0.4673.7Ptp.6768.1.S1_atAt4g33467hypothetical protein-1e-56At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.4067.0Ptp.4380.1.S1_s_atAt4g33467hypothetical protein-1e-13At3g13882structural constituent of ribosomeO.I.H.G.S.X.
0.3863.7Ptp.5866.1.S1_s_atAt4g33467hypothetical protein-2e-14At1g33140PGY2 (PIGGYBACK2)O.I.H.G.S.X.
0.3357.5Ptp.1464.2.S1_atAt4g33467--3e-40At2g4761060S ribosomal protein L7A (RPL7aA)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage