Co-expression analysis

Gene ID Zm.343.1.S1_at
Gene name outer cell layer2
Homology with ArabidopsisSimilar to At4g00730: ANL2 (ANTHOCYANINLESS 2) (HF=6e-3)
Module size 8 genes
NF 0.52
%ile 68.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6481.70.96Zm.343.1.S1_atCB603836outer cell layer2-6e-3At4g00730ANL2 (ANTHOCYANINLESS 2)O.I.H.G.S.X.
0.5571.60.97Zm.19066.1.S1_atCD975063--1e-37At2g02000GAD3 (glutamate decarboxylase 3)O.I.H.G.S.X.
0.5571.60.98Zm.6049.1.A1_atAY103705.1--1e-1At5g02400PLL2O.I.H.G.S.X.
0.5065.70.98Zm.749.1.S1_atAY291061.1photosystem II subunit PsbS1-8e-7At1g44575NPQ4 (NONPHOTOCHEMICAL QUENCHING)O.I.H.G.S.X.
0.4759.90.98Zm.17497.1.A1_atBG266429hypothetical protein LOC100273930-3e+0Atmg00140-O.I.H.G.S.X.
0.4455.70.97Zm.12838.1.A1_atBG837201--1e+0At1g26440ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)O.I.H.G.S.X.
0.4352.80.97Zm.15576.1.A1_a_atCK827910--3e-1At5g01860zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4149.70.97Zm.6049.3.A1_a_atAI734480phosphatidylinositol transporter/ transporter-3e-3At1g76640calmodulin-related protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.998.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.698.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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