Co-expression analysis

Gene ID	Zm.3412.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g42950: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (HF=1e-8)
Module size	6 genes
NF	0.20
%ile	15.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.88	Zm.3412.1.S1_at	CA405066	-	-	1e-8	At3g42950	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.88	Zm.168.1.A1_at	X52384.1	protein kinase1	-	2e-5	At5g02290	NAK	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.89	Zm.820.2.A1_x_at	BQ538933	hypothetical protein LOC100216625	-	4e+0	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.88	Zm.10313.1.S1_at	AY082396.1	knotted1-interacting protein	-	2e-7	At2g16400	BLH7 (bell1-like homeodomain 7)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.90	Zm.4954.1.A1_at	AI586618	ischemia/reperfusion inducible protein	-	2e+0	At5g64400	-	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.89	Zm.6045.10.A1_a_at	AI714790	guanine nucleotide-binding protein beta subunit-like protein	-	1e-10	At1g18080	ATARCA	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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