Co-expression analysis

Gene ID	Zm.3410.1.A1_at
Gene name	ferredoxin
Homology with Arabidopsis	Similar to At5g66190: FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) (HF=1e-42)
Module size	6 genes
NF	0.78
%ile	96.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.94	Zm.3410.1.A1_at	AB035645.1	ferredoxin	-	1e-42	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.94	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.95	Zm.370.1.S1_at	AF023159.1	starch synthase DULL1	-	1e-21	At1g11720	ATSS3 (starch synthase 3)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.93	Zm.3284.1.A1_at	BM952816	-	-	7e-1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.94	Zm.11740.1.S1_at	BM380369	-	-	1e-1	At5g28770	BZO2H3	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.95	Zm.4005.1.A1_at	BE345363	-	-	4e+0	At1g68140	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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