Co-expression analysis

Gene ID	Zm.3407.1.S1_at
Gene name	SC3 protein
Homology with Arabidopsis	Similar to At1g32050: secretory carrier membrane protein (SCAMP) family protein (HF=3e-6)
Module size	12 genes
NF	0.54
%ile	71.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.98	Zm.3407.1.S1_at	BM080146	SC3 protein	-	3e-6	At1g32050	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.98	Zm.9117.1.A1_at	CF636944	hypothetical protein LOC100274722	-	4e-1	At1g71865	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.98	ZmAffx.188.1.S1_at	AI668391	Hypothetical protein LOC100216777	-	3e-6	At1g13690	ATE1	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	Zm.10557.1.A1_a_at	CK347884	hypothetical protein LOC100280344 /// agmatine deiminase	-	6e-6	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	Zm.6751.1.A1_at	BG873976	hypothetical protein LOC100274772	-	4e-5	At3g62580	-	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.99	ZmAffx.1199.1.S1_at	BE057023	-	-	5e-2	At3g48610	phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.9335.1.A1_at	BM268136	hypothetical protein LOC100273605	-	2e-2	At2g40580	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.10148.1.A1_at	BM382070	-	-	3e-1	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	ZmAffx.932.1.A1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.19338.1.S1_at	CO520504	-	-	4e-2	At1g30870	cationic peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.14497.11.S1_at	BQ619270	-	-	3e-8	At5g59910	HTB4	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.99	Zm.17775.1.S1_at	CF627602	50S ribosomal protein L12-2	-	5e+0	At4g14358	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.1	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.7	93.2	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.7	93.2	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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