Co-expression analysis

Gene ID	Zm.3400.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g17170: ENH1 (enhancer of sos3-1) (HF=2e-9)
Module size	6 genes
NF	0.15
%ile	9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	61.3	0.92	Zm.3400.1.S1_at	CN845120	-	-	2e-9	At5g17170	ENH1 (enhancer of sos3-1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.92	Zm.12546.2.S1_a_at	AI770557	-	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.93	Zm.5003.2.A1_at	CO518270	-	-	9e-2	At4g25570	ACYB-2	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.93	Zm.11962.1.A1_at	BM382210	-	-	2e-1	At1g25260	acidic ribosomal protein P0-related	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.93	Zm.2119.2.A1_at	CA404565	hypothetical protein LOC100193866	-	9e-5	At3g23890	TOPII (TOPOISOMERASE II)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.93	Zm.4037.1.A1_at	X67561.1	Zmhox1a homeobox protein	-	3e-5	At3g19510	HAT3.1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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