Co-expression analysis

Gene ID Zm.3303.1.A1_x_at
Gene name lipoxygenase
Homology with ArabidopsisSimilar to At3g22400: LOX5 (HF=6e-6)
Module size 30 genes
NF 0.48
%ile 60.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8194.30.94Zm.3303.1.A1_x_atAF271894.1lipoxygenase-6e-6At3g22400LOX5O.I.H.G.S.X.
0.6682.30.96Zm.14428.1.S1_atAY106109.1cyclin-L2-4e+0At4g27410RD26 (RESPONSIVE TO DESICCATION 26)O.I.H.G.S.X.
0.6179.50.96Zm.12223.2.A1_atBM381831hypothetical protein LOC100273854-9e-2At3g60280UCC3 (UCLACYANIN 3)O.I.H.G.S.X.
0.6077.80.96Zm.14078.1.A1_atAY104559.1hypothetical protein LOC100194235-3e-12At3g11910UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)O.I.H.G.S.X.
0.5976.10.95Zm.5400.1.S1_atCF627418--6e-2At5g20840phosphoinositide phosphatase family proteinO.I.H.G.S.X.
0.5976.10.96Zm.18347.1.A1_atBM078855hypothetical protein LOC100192822-1e-11At1g21480exostosin family proteinO.I.H.G.S.X.
0.5875.10.96Zm.6038.2.S1_atAY105962.1GPI-anchored protein-2e+0At4g28280unknown proteinO.I.H.G.S.X.
0.5875.10.96Zm.6712.1.A1_atAI734734--1e-54At2g32670ATVAMP725O.I.H.G.S.X.
0.5571.60.96Zm.3961.1.S1_atCK370362hypothetical protein LOC100272531-3e-7At1g70290ATTPS8O.I.H.G.S.X.
0.5469.80.97Zm.11624.1.A1_atCF637935thioredoxin H-type-3e-1At3g51030ATTRX1O.I.H.G.S.X.
0.5369.10.95Zm.24.2.S1_a_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinO.I.H.G.S.X.
0.5267.30.96Zm.18270.1.A1_atCA399376Hypothetical protein LOC100194036-3e-6At4g37200HCF164O.I.H.G.S.X.
0.5166.40.96Zm.534.1.A1_x_atAF276086.1protein kinase AKINbetagamma-2-3e-10At1g09020SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)O.I.H.G.S.X.
0.5065.70.96Zm.16520.1.S1_atCF675023--2e-13At1g61140EDA16 (embryo sac development arrest 16)O.I.H.G.S.X.
0.4961.90.96Zm.7402.1.A1_atAY106816.1IDP1704 protein /// hypothetical protein LOC100193772-2e+0At1g12780UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)O.I.H.G.S.X.
0.4556.40.96Zm.14078.2.S1_atCA398989--3e-10At3g11910UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)O.I.H.G.S.X.
0.4556.40.97Zm.10174.1.S1_atAY111125.1--4e+0At2g47370-O.I.H.G.S.X.
0.4455.70.95Zm.264.2.A1_x_atCF012670acetyl-coenzyme A carboxylase-8e+0At5g02890transferase family proteinO.I.H.G.S.X.
0.4149.70.96Zm.16811.2.A1_atAY109492.1Hypothetical protein LOC100193878-4e-73At2g42740RPL16AO.I.H.G.S.X.
0.4149.70.97Zm.14125.1.A1_atCO533246hypothetical protein LOC100273725-3e-4At3g51280male sterility MS5, putativeO.I.H.G.S.X.
0.4048.50.96Zm.8062.1.A1_atBM380417--2e-5At1g68920basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4048.50.97Zm.17858.1.S1_atAY111541.1hypothetical protein AY111541-2e+0At3g53620AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)O.I.H.G.S.X.
0.3538.90.96Zm.154.1.S1_atBM339072actin-1-3e-108At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.3538.90.97Zm.5503.1.A1_atAW000029hypothetical protein LOC100192784-9e-3At4g35920MCA1 (mid1-complementing activity 1)O.I.H.G.S.X.
0.3538.90.97Zm.6874.2.S1_a_atCF637577hypothetical protein LOC100193230-3e-3At2g45430DNA-binding protein-relatedO.I.H.G.S.X.
0.3538.90.96Zm.5439.1.S1_atCA831388serine/threonine-protein kinase 12-5e-2At5g38790unknown proteinO.I.H.G.S.X.
0.3538.90.96Zm.4429.1.S1_atAI714803hypothetical protein LOC100216759-2e+1At5g24355unknown proteinO.I.H.G.S.X.
0.3538.90.96Zm.6207.3.A1_atCA40331860S ribosomal protein L15-3e-26At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.3336.00.96Zm.6655.2.A1_atCO530125--6e+0At3g45960ATEXLA3 (arabidopsis thaliana expansin-like a3)O.I.H.G.S.X.
0.2419.80.97Zm.13249.2.A1_x_atCF012746--1e+0At1g35255unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.1GSM253254ZM_24h_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.197.4GSM253253ZM_24h_SG200_3inf_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.797.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM253255ZM_24h_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.597.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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