Co-expression analysis

Gene ID Zm.3283.2.A1_a_at
Gene name hypothetical protein LOC100192072
Homology with ArabidopsisSimilar to At3g46110: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.41
%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.97Zm.3283.2.A1_a_atBM335982hypothetical protein LOC100192072-2e+0At3g46110unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.13931.1.A1_x_atZ35302.1--8e-1At1g09630ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)O.I.H.G.S.X.
0.3131.60.98Zm.3930.1.S1_atBQ538158AMP-binding protein-8e-37At3g05970LACS6 (long-chain acyl-CoA synthetase 6)O.I.H.G.S.X.
0.2724.60.98Zm.9285.1.A1_atBM339972disease resistance response protein 206-6e+0At5g46874-O.I.H.G.S.X.
0.2622.70.98Zm.9900.1.A1_atBM351046--2e-2At5g28610-O.I.H.G.S.X.
0.2521.30.98Zm.17512.1.S1_atCF057479hypothetical protein LOC100192897-2e-9At4g25590ADF7 (actin depolymerizing factor 7)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.10.97Zm.7023.2.A1_atAI734540--9e-1At2g27250CLV3 (CLAVATA3)O.I.H.G.S.X.
0.6077.80.97Zm.1085.4.A1_atBM349000--7e-9At1g55670PSAG (PHOTOSYSTEM I SUBUNIT G)O.I.H.G.S.X.
0.5571.60.96Zm.9283.1.A1_atBM267774--1e+0At2g20930-O.I.H.G.S.X.
0.5065.70.95Zm.6090.2.A1_a_atCA399111protease 2-1e+0At3g52130protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5065.70.97ZmAffx.941.1.A1_atAI820356--8e-1At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.4251.30.95Zm.1800.1.S1_atCD446335serine/threonine protein kinase-3e-7At2g24360serine/threonine/tyrosine kinase, putativeO.I.H.G.S.X.
0.4048.50.96Zm.15839.1.S1_atAY109200.1--2e-2At4g33660unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.17367.1.A1_atCF637207protein Mo25-4e-4At5g18940Mo25 family proteinO.I.H.G.S.X.
0.4048.50.97Zm.2778.1.S1_atAW067213myb family transcription factor-related protein-3e-15At1g79430APL (ALTERED PHLOEM DEVELOPMENT)O.I.H.G.S.X.
0.3844.20.97Zm.14088.2.A1_atBM379465--5e-19At2g05710aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeO.I.H.G.S.X.
0.3844.20.95Zm.19056.1.A1_atCD972621AT-hook protein 1-8e-4At2g33620DNA-binding family protein / AT-hook protein 1 (AHP1)O.I.H.G.S.X.
0.3844.20.97ZmAffx.1082.1.A1_atAI973391--3e+0At1g60983SCRL8 (SCR-Like 8)O.I.H.G.S.X.
0.3641.30.95Zm.15758.1.A1_atAY110766.1--2e-17At3g59040pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3641.30.96ZmAffx.799.1.A1_atAI770347--5e-2At1g75080BZR1 (BRASSINAZOLE-RESISTANT 1)O.I.H.G.S.X.
0.3641.30.96Zm.8040.2.A1_x_atAI665386hypothetical protein LOC100274921 /// hypothetical protein LOC100277542-3e+0At3g19130ATRBP47B (RNA-binding protein 47B)O.I.H.G.S.X.
0.3641.30.97ZmAffx.1106.1.S1_atAW216267--3e-3At1g60550ECHID (ENOYL-COA HYDRATASE/ISOMERASE D)O.I.H.G.S.X.
0.3538.90.96Zm.15278.1.S1_atBM380074hypothetical protein LOC100278126-1e+1At4g16380metal ion bindingO.I.H.G.S.X.
0.3233.40.96ZmAffx.883.1.A1_atAI770811--3e+0At3g15080exonuclease family proteinO.I.H.G.S.X.
0.3233.40.95Zm.4474.2.S1_a_atAY108450.1hypothetical protein LOC100279979 /// protein phosphatase 2C-3e+0At5g46720-O.I.H.G.S.X.
0.3233.40.97ZmAffx.831.1.A1_atAI770541Hypothetical protein LOC100191667-2e-1At1g21900emp24/gp25L/p24 family proteinO.I.H.G.S.X.
0.3233.40.97Zm.9646.1.A1_atBM334563negatively light-regulated protein-5e+0At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.3131.60.97ZmAffx.897.1.S1_atAI770885--2e-1At2g12170unknown proteinO.I.H.G.S.X.
0.3131.60.94Zm.5344.1.A1_atAI619336--5e+0At2g25500-O.I.H.G.S.X.
0.3131.60.96--O.I.H.G.S.X.
0.3029.80.96ZmAffx.1152.1.S1_atAW424633--3e+0At2g14935LCR40 (Low-molecular-weight cysteine-rich 40)O.I.H.G.S.X.
0.2928.10.96Zm.17413.1.A1_atAY111871.1--3e-6At4g39460SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1)O.I.H.G.S.X.
0.2928.10.97Zm.17735.1.S1_atAY110585.1--1e+0At2g17130IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)O.I.H.G.S.X.
0.2724.60.96Zm.13926.1.A1_atU41080.1--7e-1At3g24506unknown proteinO.I.H.G.S.X.
0.2724.60.96Zm.13944.4.A1_a_atAY104794.160S ribosomal protein L29 /// glycine-rich RNA-binding protein 8-2e-1At3g51960bZIP family transcription factorO.I.H.G.S.X.
0.2724.60.97ZmAffx.83.1.S1_atAI665302--8e-1At5g062902-Cys Prx B (2-Cysteine peroxiredoxin B)O.I.H.G.S.X.
0.2521.30.94Zm.7151.1.A1_atBM339369--3e-9At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.2521.30.97Zm.780.1.A1_atBM338596hypothetical protein LOC100272922-2e+0At4g11190disease resistance-responsive family protein / dirigent family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.798.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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