Co-expression analysis

Gene ID	Zm.3283.2.A1_a_at
Gene name	hypothetical protein LOC100192072
Homology with Arabidopsis	Similar to At3g46110: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.41
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.97	Zm.3283.2.A1_a_at	BM335982	hypothetical protein LOC100192072	-	2e+0	At3g46110	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.13931.1.A1_x_at	Z35302.1	-	-	8e-1	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.3930.1.S1_at	BQ538158	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.9285.1.A1_at	BM339972	disease resistance response protein 206	-	6e+0	At5g46874	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.9900.1.A1_at	BM351046	-	-	2e-2	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.17512.1.S1_at	CF057479	hypothetical protein LOC100192897	-	2e-9	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1611315_at, orthologous to the query gene, Zm.3283.2.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	1611315_at	At3g46110	hypothetical protein LOC100261906	-	6e-49	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620354_at	At3g46110	hypothetical protein LOC100261409	-	1e-15	At5g27770	60S ribosomal protein L22 (RPL22C)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1613599_a_at	At3g46110	hypothetical protein LOC100253770 /// hypothetical protein LOC100263573	-	5e-56	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1617104_at	At3g46110	hypothetical protein LOC100266267	-	4e-53	At5g52470	FIB1 (FIBRILLARIN 1)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1616492_at	At3g46110	hypothetical protein LOC100245095	-	1e-12	At1g79470	inosine-5'-monophosphate dehydrogenase	O.I.	H.G.	S.X.	Please select
0.32	43.1	1611700_at	At3g46110	hypothetical protein LOC100254168	-	2e-9	At3g59650	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1608064_at	At3g46110	hypothetical protein LOC100254541	-	3e-30	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1609713_at	At3g46110	similar to ribosomal protein L10a	-	4e-51	At2g27530	PGY1 (PIGGYBACK1)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1607140_at	At3g46110	similar to 40S ribosomal S4 protein	-	5e-94	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1613631_at	At3g46110	hypothetical protein LOC100267090	-	3e-2	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1608093_at	At3g46110	hypothetical protein LOC100262886	-	5e-12	At3g43980	40S ribosomal protein S29 (RPS29A)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1616442_a_at	At3g46110	hypothetical protein LOC100249356	-	2e-45	At2g21580	40S ribosomal protein S25 (RPS25B)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1610095_s_at	At3g46110	hypothetical protein LOC100257471	-	9e-49	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1618190_at	At3g46110	hypothetical protein LOC100254589	-	4e-72	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.16	16.7	1621913_at	At3g46110	hypothetical protein LOC100247362	-	5e-15	At3g29090	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1609892_at	At3g46110	hypothetical protein LOC100265365	-	3e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1622564_at	At3g46110	hypothetical protein LOC100260573	-	1e-35	At1g58684	40S ribosomal protein S2, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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