CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3283.2.A1_a_at

Gene name hypothetical protein LOC100192072
Homology with Arabidopsis Similar to At3g46110: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.41

%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.6 0.97 Zm.3283.2.A1_a_at BM335982 hypothetical protein LOC100192072 - 2e+0 At3g46110 unknown protein O.I. H.G. S.X.
0.55 71.6 0.97 Zm.13931.1.A1_x_at Z35302.1 - - 8e-1 At1g09630 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) O.I. H.G. S.X.
0.31 31.6 0.98 Zm.3930.1.S1_at BQ538158 AMP-binding protein - 8e-37 At3g05970 LACS6 (long-chain acyl-CoA synthetase 6) O.I. H.G. S.X.
0.27 24.6 0.98 Zm.9285.1.A1_at BM339972 disease resistance response protein 206 - 6e+0 At5g46874 - O.I. H.G. S.X.
0.26 22.7 0.98 Zm.9900.1.A1_at BM351046 - - 2e-2 At5g28610 - O.I. H.G. S.X.
0.25 21.3 0.98 Zm.17512.1.S1_at CF057479 hypothetical protein LOC100192897 - 2e-9 At4g25590 ADF7 (actin depolymerizing factor 7) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3 98.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7 98.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.113677.1.S1_at, orthologous to the query gene, Zm.3283.2.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 97.1 PtpAffx.113677.1.S1_at At3g46110 hypothetical protein - 5e-31 At4g19120 ERD3 (early-responsive to dehydration 3) O.I. H.G. S.X.
0.36 61.6 Ptp.6290.1.S1_at At3g46110 hypothetical protein - 8e-58 At1g14000 VIK (VH1-INTERACTING KINASE) O.I. H.G. S.X.
0.36 61.6 PtpAffx.20962.1.S1_at At3g46110 hypothetical protein - 2e-27 At2g20360 binding / catalytic/ coenzyme binding O.I. H.G. S.X.
0.31 53.7 PtpAffx.133062.1.S1_at At3g46110 hypothetical protein - 5e-1 At3g09035 legume lectin family protein O.I. H.G. S.X.
0.24 41.8 PtpAffx.220936.1.S1_at At3g46110 integral membrane single C2 domain protein /// hypothetical protein - 6e-17 At3g61050 NTMC2T4 O.I. H.G. S.X.
0.22 38.3 PtpAffx.74657.1.S1_s_at At3g46110 hypothetical protein - 3e-45 At3g42050 vacuolar ATP synthase subunit H family protein O.I. H.G. S.X.
0.17 29.1 PtpAffx.211143.1.S1_at At3g46110 hypothetical protein - 1e-13 At5g35980 protein kinase family protein O.I. H.G. S.X.
0.15 25.3 Ptp.4396.1.S1_at At3g46110 hypothetical protein - 3e-12 At1g76150 maoC-like dehydratase domain-containing protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.110831.1.S1_at At3g46110 hypothetical protein - 3e-8 At3g52290 IQD3 (IQ-domain 3) O.I. H.G. S.X.
0.14 23.5 Ptp.1502.3.S1_a_at At3g46110 hypothetical protein - 9e-8 At1g51200 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.11 18.1 PtpAffx.152437.4.S1_s_at At3g46110 hypothetical protein - 4e-44 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) O.I. H.G. S.X.
0.06 9.8 PtpAffx.204258.1.S1_at At3g46110 hypothetical protein - 3e-9 At4g38900 bZIP protein O.I. H.G. S.X.
0.05 8.3 PtpAffx.88987.1.A1_s_at At3g46110 hypothetical protein - 5e-3 At1g67170 unknown protein O.I. H.G. S.X.
0.05 8.3 PtpAffx.9076.2.S1_at At3g46110 hypothetical protein - 2e-3 At1g05820 aspartic-type endopeptidase/ peptidase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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