CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3283.2.A1_a_at

Gene name hypothetical protein LOC100192072
Homology with Arabidopsis Similar to At3g46110: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.41

%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.6 0.97 Zm.3283.2.A1_a_at BM335982 hypothetical protein LOC100192072 - 2e+0 At3g46110 unknown protein O.I. H.G. S.X.
0.55 71.6 0.97 Zm.13931.1.A1_x_at Z35302.1 - - 8e-1 At1g09630 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) O.I. H.G. S.X.
0.31 31.6 0.98 Zm.3930.1.S1_at BQ538158 AMP-binding protein - 8e-37 At3g05970 LACS6 (long-chain acyl-CoA synthetase 6) O.I. H.G. S.X.
0.27 24.6 0.98 Zm.9285.1.A1_at BM339972 disease resistance response protein 206 - 6e+0 At5g46874 - O.I. H.G. S.X.
0.26 22.7 0.98 Zm.9900.1.A1_at BM351046 - - 2e-2 At5g28610 - O.I. H.G. S.X.
0.25 21.3 0.98 Zm.17512.1.S1_at CF057479 hypothetical protein LOC100192897 - 2e-9 At4g25590 ADF7 (actin depolymerizing factor 7) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3 98.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7 98.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os01g0668100, orthologous to the query gene, Zm.3283.2.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os01g0668100 At3g46110 - Beta-Ig-H3/fasciclin domain containing protein 1e-1 At3g57500 unknown protein O.I. H.G. S.X.
0.67 87.2 Os02g0285300 At3g46110 - DREPP plasma membrane polypeptide family protein 2e+0 At5g51720 unknown protein O.I. H.G. S.X.
0.55 73.7 Os09g0469600 At3g46110 - Hypothetical protein 2e+0 At2g17300 unknown protein O.I. H.G. S.X.
0.50 68.0 Os07g0590800 At3g46110 - Hypothetical protein 1e+0 At5g61490 - O.I. H.G. S.X.
0.40 51.1 Os02g0653000 At3g46110 - Conserved hypothetical protein 1e+1 At5g27670 HTA7 (HISTONE H2A 7) O.I. H.G. S.X.
0.19 15.1 Os01g0805900 At3g46110 - Tubulin beta-2 chain (Beta-2 tubulin) 0 At5g12250 TUB6 (BETA-6 TUBULIN) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage