Co-expression analysis

Gene ID	Zm.3283.2.A1_a_at
Gene name	hypothetical protein LOC100192072
Homology with Arabidopsis	Similar to At3g46110: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.41
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.97	Zm.3283.2.A1_a_at	BM335982	hypothetical protein LOC100192072	-	2e+0	At3g46110	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.13931.1.A1_x_at	Z35302.1	-	-	8e-1	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.3930.1.S1_at	BQ538158	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.9285.1.A1_at	BM339972	disease resistance response protein 206	-	6e+0	At5g46874	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.9900.1.A1_at	BM351046	-	-	2e-2	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.17512.1.S1_at	CF057479	hypothetical protein LOC100192897	-	2e-9	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL463Contig1_at, orthologous to the query gene, Zm.3283.2.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.99	100.0	PsAffx.CL463Contig1_at	At3g46110	-	-	4e+0	At1g05340	unknown protein	O.I.	H.G.	S.X.	Please select
0.95	99.4	PsAffx.C3000161_at	At3g46110	-	-	3e+1	Atmg00030	-	O.I.	H.G.	S.X.	Please select
0.94	99.2	PsAffx.psHB006xI02f_at	At3g46110	-	-	5e+0	At4g14225	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.94	99.2	PsAffx.CL1170Contig1_at	At3g46110	-	-	2e+0	At3g16510	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.92	98.9	PsAffx.C37000040_at	At3g46110	-	-	5e-2	At1g64490	unknown protein	O.I.	H.G.	S.X.	Please select
0.92	98.9	PsAffx.CL2493Contig1_s_at	At3g46110	-	-	1e+0	At5g59990	-	O.I.	H.G.	S.X.	Please select
0.92	98.9	PsAffx.C169000021_at	At3g46110	-	-	6e-1	At5g09340	ubiquitin, putative	O.I.	H.G.	S.X.	Please select
0.91	98.6	PsAffx.CL1578Contig1_at	At3g46110	-	-	2e+0	At5g22710	-	O.I.	H.G.	S.X.	Please select
0.89	93.5	PsAffx.C87000042_s_at	At3g46110	-	-	8e-1	At4g35970	APX5 (ASCORBATE PEROXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.89	93.5	GmaAffx.39973.1.S1_s_at	At3g46110	-	-	1e+1	At5g14500	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.89	93.5	PsAffx.C16000050_s_at	At3g46110	-	-	4e+0	At4g37240	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.CL335Contig1_at	At3g46110	-	-	4e+0	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.CL2154Contig1_at	At3g46110	-	-	1e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.CL454Contig1_at	At3g46110	-	-	5e+0	At2g33690	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.psMA009xK08f_at	At3g46110	-	-	3e+0	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.CL441Contig1_at	At3g46110	-	-	3e+1	Atmg00540	-	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.CL1969Contig1_at	At3g46110	-	-	5e+0	At5g62660	F-box family protein	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.psMY008iB06r_at	At3g46110	-	-	1e+0	At5g07230	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.87	93.2	PsAffx.CL392Contig1_at	At3g46110	-	-	1e-1	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.	Please select
0.87	93.2	PsAffx.CL166Contig1_at	At3g46110	-	-	2e+0	At5g06270	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	93.2	PsAffx.C73000021_s_at	At3g46110	-	-	1e+0	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.86	93.0	PsAffx.CL170Contig1_s_at	At3g46110	-	-	1e+1	At5g57030	LUT2 (LUTEIN DEFICIENT 2)	O.I.	H.G.	S.X.	Please select
0.86	93.0	PsAffx.C66000030_at	At3g46110	-	-	3e+0	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.86	93.0	PsAffx.CL647Contig1_at	At3g46110	-	-	4e-1	At3g25600	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.86	93.0	PsAffx.CL192Contig1_at	At3g46110	-	-	5e-1	At5g54660	heat shock protein-related	O.I.	H.G.	S.X.	Please select
0.86	93.0	PsAffx.CL327Contig1_at	At3g46110	-	-	5e-1	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.CL561Contig1_at	At3g46110	-	-	5e+0	At2g40230	transferase family protein	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.CL1036Contig1_at	At3g46110	-	-	4e+0	At2g44270	ATP binding	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.C49000056_at	At3g46110	-	-	7e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.CL84Contig2_at	At3g46110	-	-	5e+0	At4g30460	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.psMA002xD04f_at	At3g46110	-	-	3e-1	At5g38070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.psHB005xN04f_at	At3g46110	-	-	1e+1	At3g04943	LCR41 (Low-molecular-weight cysteine-rich 41)	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.C3000147_s_at	At3g46110	-	-	8e+0	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.psMA011xC03f_at	At3g46110	-	-	4e+0	At2g07669	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	92.8	PsAffx.CL274Contig1_at	At3g46110	-	-	2e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.	Please select
0.84	92.6	PsAffx.CL197Contig3_at	At3g46110	-	-	5e+0	At3g50270	transferase family protein	O.I.	H.G.	S.X.	Please select
0.84	92.6	PsAffx.CL153Contig1_at	At3g46110	-	-	5e+0	At5g65495	unknown protein	O.I.	H.G.	S.X.	Please select
0.84	92.6	PsAffx.CL1179Contig1_at	At3g46110	-	-	3e+0	At3g59810	small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative	O.I.	H.G.	S.X.	Please select
0.82	91.9	GmaAffx.53613.1.S1_s_at	At3g46110	-	-	3e+0	At5g28660	-	O.I.	H.G.	S.X.	Please select
0.82	91.9	PsAffx.CL201Contig1_at	At3g46110	-	-	6e+0	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	91.7	PsAffx.C112000048_at	At3g46110	-	-	2e+0	At1g49000	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	91.5	PsAffx.C97000017_s_at	At3g46110	-	-	8e-1	At2g40802	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	91.5	PsAffx.psMC006xC02f_at	At3g46110	-	-	3e+0	At5g16550	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	PsAffx.CL457Contig1_at	At3g46110	-	-	3e+0	At2g29125	RTFL2 (ROTUNDIFOLIA LIKE 2)	O.I.	H.G.	S.X.	Please select
0.75	89.5	PsAffx.C271000011_at	At3g46110	-	-	5e-1	At4g17585	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	88.1	PsAffx.CL76Contig1_at	At3g46110	-	-	9e-1	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	O.I.	H.G.	S.X.	Please select
0.63	82.9	PsAffx.C47000106_at	At3g46110	-	-	1e-1	At4g39320	microtubule-associated protein-related	O.I.	H.G.	S.X.	Please select
0.62	82.1	PsAffx.CL186Contig1_s_at	At3g46110	-	-	2e+0	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	PsAffx.CL1866Contig1_at	At3g46110	-	-	2e-1	At1g60830	U2 snRNP auxiliary factor large subunit, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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