Co-expression analysis

Gene ID	Zm.3169.5.S1_x_at
Gene name	minichromosome maintenance protein
Homology with Arabidopsis	Similar to At5g44635: minichromosome maintenance family protein / MCM family protein (HF=1e-1)
Module size	6 genes
NF	0.66
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	1.00	Zm.3169.5.S1_x_at	AI739763	minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	1.00	Zm.7016.1.A1_a_at	AY103859.1	hypothetical protein LOC100275203 /// hypothetical protein LOC100276238	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	ZmAffx.1103.1.A1_at	AW191100	-	-	1e+1	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	ZmAffx.108.1.S1_at	AI665554	Hypothetical protein LOC100191707	-	8e-1	At5g39640	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	1.00	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6297.1.S1_a_at, orthologous to the query gene, Zm.3169.5.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.6297.1.S1_a_at	At5g44635	-	-	1e-71	At5g44635	minichromosome maintenance family protein / MCM family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.8847.2.A1_a_at	At5g44635	-	-	4e+0	At5g15530	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.14537.3.S1_a_at	At5g44635	-	-	4e+0	At4g38800	ATMTN1	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.7561.1.S1_at	At5g44635	-	-	7e-67	At4g02060	PRL (PROLIFERA)	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.7561.1.S1_x_at	At5g44635	-	-	7e-67	At4g02060	PRL (PROLIFERA)	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.9261.1.S1_at	At5g44635	-	-	3e-19	At4g14140	DMT2 (DNA METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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