Co-expression analysis

Gene ID Zm.3169.5.S1_x_at
Gene name minichromosome maintenance protein
Homology with ArabidopsisSimilar to At5g44635: minichromosome maintenance family protein / MCM family protein (HF=1e-1)
Module size 6 genes
NF 0.66
%ile 87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.01.00Zm.3169.5.S1_x_atAI739763minichromosome maintenance protein-1e-1At5g44635minichromosome maintenance family protein / MCM family proteinO.I.H.G.S.X.
0.6179.51.00Zm.7016.1.A1_a_atAY103859.1hypothetical protein LOC100275203 /// hypothetical protein LOC100276238-3e-1At5g44610MAP18 (Microtubule-associated Protein 18)O.I.H.G.S.X.
0.5571.61.00Zm.14692.1.A1_s_atBQ539260hypothetical protein LOC100276042-5e+0At1g09195-O.I.H.G.S.X.
0.5369.11.00ZmAffx.1103.1.A1_atAW191100--1e+1At5g43700ATAUX2-11 (AUXIN INDUCIBLE 2-11)O.I.H.G.S.X.
0.5065.71.00ZmAffx.108.1.S1_atAI665554Hypothetical protein LOC100191707-8e-1At5g39640unknown proteinO.I.H.G.S.X.
0.4455.71.00ZmAffx.87.1.A1_atAI665344--1e+1At5g39330unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.198.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6297.1.S1_a_at, orthologous to the query gene, Zm.3169.5.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2Ta.6297.1.S1_a_atAt5g44635--1e-71At5g44635minichromosome maintenance family protein / MCM family proteinO.I.H.G.S.X.
0.6786.3Ta.8847.2.A1_a_atAt5g44635--4e+0At5g15530BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.6383.1Ta.14537.3.S1_a_atAt5g44635--4e+0At4g38800ATMTN1O.I.H.G.S.X.
0.5779.2Ta.7561.1.S1_atAt5g44635--7e-67At4g02060PRL (PROLIFERA)O.I.H.G.S.X.
0.5779.2Ta.7561.1.S1_x_atAt5g44635--7e-67At4g02060PRL (PROLIFERA)O.I.H.G.S.X.
0.5374.9Ta.9261.1.S1_atAt5g44635--3e-19At4g14140DMT2 (DNA METHYLTRANSFERASE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage