Co-expression analysis

Gene ID	Zm.3161.1.S1_at
Gene name	hypothetical protein LOC100273395
Homology with Arabidopsis	Similar to At2g35190: NPSN11 (NOVEL PLANT SNARE 11) (HF=3e-6)
Module size	7 genes
NF	0.63
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.97	Zm.3161.1.S1_at	AY108575.1	hypothetical protein LOC100273395	-	3e-6	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.898.1.A1_a_at	BM337541	-	-	1e+0	At3g02730	TRXF1 (THIOREDOXIN F-TYPE 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.12510.1.S1_at	AW056992	-	-	5e+0	At1g76955	Expressed protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.10141.1.A1_at	AY108995.1	esterase	-	2e+0	At4g38690	1-phosphatidylinositol phosphodiesterase-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.2770.1.A1_at	BM380104	hypothetical protein LOC100192561	-	1e+0	At2g17860	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.19215.2.S1_at	BG321066	-	-	2e-12	At1g30480	DRT111	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	97.7	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.3	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
5.5	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.7	95.4	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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