CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3135.1.S1_at

Gene name catalytic/ protein phosphatase type 2C
Homology with Arabidopsis Similar to At1g47380: protein phosphatase 2C-related / PP2C-related (HF=2e-13)

Module size 6 genes

NF 0.71

%ile 93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.97 Zm.3135.1.S1_at CD981826 catalytic/ protein phosphatase type 2C - 2e-13 At1g47380 protein phosphatase 2C-related / PP2C-related O.I. H.G. S.X.
0.83 95.6 0.98 Zm.16843.1.S1_at AI978092 - - 2e-47 At1g50370 serine/threonine protein phosphatase, putative O.I. H.G. S.X.
0.77 92.1 0.98 Zm.17572.2.S1_at CF972387 heat- and acid-stable phosphoprotein - 3e-8 At5g46020 unknown protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.2163.1.S1_at AY105593.1 - - 2e-4 At3g59400 GUN4 O.I. H.G. S.X.
0.60 77.8 0.98 Zm.13620.1.A1_at CK369896 - - 8e-6 At2g37550 AGD7 O.I. H.G. S.X.
0.42 51.3 0.98 Zm.9984.1.A1_at CO529085 Hypothetical protein LOC100217031 - 4e-4 At1g65000 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	92.1	0.97	Zm.3135.1.S1_at	CD981826	catalytic/ protein phosphatase type 2C	-	2e-13	At1g47380	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.
0.83	95.6	0.98	Zm.16843.1.S1_at	AI978092	-	-	2e-47	At1g50370	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.
0.77	92.1	0.98	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	O.I.	H.G.	S.X.
0.67	85.8	0.98	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	O.I.	H.G.	S.X.
0.60	77.8	0.98	Zm.13620.1.A1_at	CK369896	-	-	8e-6	At2g37550	AGD7	O.I.	H.G.	S.X.
0.42	51.3	0.98	Zm.9984.1.A1_at	CO529085	Hypothetical protein LOC100217031	-	4e-4	At1g65000	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.0	0.97	Zm.6334.1.A1_at	AY108462.1	hypothetical protein LOC100279181	-	5e+0	At2g29840	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.61	79.5	0.96	Zm.505.2.A1_at	AI665681	Glucose translocator1	-	8e-1	Atcg00800	-	O.I.	H.G.	S.X.
0.61	79.5	0.97	Zm.14807.1.S1_s_at	BU050489	Hypothetical protein LOC100192365	-	3e+0	At5g15560	unknown protein	O.I.	H.G.	S.X.
0.59	76.1	0.96	Zm.11595.1.A1_at	BM379199	hypothetical protein LOC100194210	-	4e+0	At3g28500	60S acidic ribosomal protein P2 (RPP2C)	O.I.	H.G.	S.X.
0.57	75.1	0.96	Zm.7413.1.A1_at	BM078318	lysM domain containing protein	-	1e-1	At1g55000	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.
0.50	65.7	0.95	Zm.19123.1.A1_at	BM348809	-	-	9e-12	At3g26020	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	O.I.	H.G.	S.X.
0.50	65.7	0.96	Zm.6469.1.S1_at	BE345306	-	-	4e+0	At3g03405	-	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.50	65.7	0.98	Zm.14807.1.S1_at	BU050489	Hypothetical protein LOC100192365	-	3e+0	At5g15560	unknown protein	O.I.	H.G.	S.X.
0.48	61.3	0.96	Zm.13030.1.S1_at	AY108564.1	-	-	5e+0	At3g17940	aldose 1-epimerase family protein	O.I.	H.G.	S.X.
0.47	59.9	0.97	Zm.2489.1.A1_at	CD447064	mitochondrial chaperonin-60	-	8e-82	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	O.I.	H.G.	S.X.
0.46	58.4	0.97	Zm.4895.1.A1_at	AY105014.1	hypothetical protein LOC100274005	-	5e-5	At3g59140	ATMRP14	O.I.	H.G.	S.X.
0.46	58.4	0.96	Zm.15852.1.S1_at	AI619099	hypothetical protein LOC100193543	-	9e-47	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	O.I.	H.G.	S.X.
0.46	58.4	0.97	Zm.471.1.A1_s_at	AF145756.1	tha9 protein	-	9e-2	At1g80090	CBS domain-containing protein	O.I.	H.G.	S.X.
0.44	55.7	0.98	Zm.16988.1.A1_at	L10634.1	beta-7 tubulin	-	4e-117	At5g23860	TUB8	O.I.	H.G.	S.X.
0.43	52.8	0.95	Zm.1923.1.S1_at	AW520097	-	-	8e-2	At1g71720	S1 RNA-binding domain-containing protein	O.I.	H.G.	S.X.
0.43	52.8	0.95	Zm.13837.1.A1_at	AY104223.1	hypothetical protein LOC100193655	-	6e-11	At2g43770	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.39	45.6	0.94	Zm.8349.1.A1_at	BM073798	-	-	1e+1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.
0.38	44.2	0.96	Zm.6518.1.S1_at	AW927338	plastid-lipid-associated protein 2	-	2e-4	At4g04020	FIB (FIBRILLIN)	O.I.	H.G.	S.X.
0.36	41.3	0.95	Zm.15612.1.A1_at	CD436836	hypothetical protein LOC100274384	-	2e+0	At5g06360	ribosomal protein S8e family protein	O.I.	H.G.	S.X.
0.36	41.3	0.97	Zm.6671.1.S1_a_at	BM379927	germin-like protein 1	-	7e+0	At3g23167	LCR39 (Low-molecular-weight cysteine-rich 39)	O.I.	H.G.	S.X.
0.36	41.3	0.97	Zm.6475.1.A1_at	CK347790	hypothetical protein LOC100277255	-	5e+0	At5g57400	unknown protein	O.I.	H.G.	S.X.
0.35	38.9	0.95	Zm.6030.3.S1_x_at	BG840166	hypothetical protein LOC100192550	-	1e-35	At2g36160	40S ribosomal protein S14 (RPS14A)	O.I.	H.G.	S.X.
0.35	38.9	0.97	Zm.13746.1.S1_at	CD998898	pre-mRNA-splicing factor cwc24	-	4e-11	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.
0.33	36.0	0.94	Zm.18208.1.A1_s_at	BM338077	hypothetical protein LOC100275571	-	4e+0	At3g45245	-	O.I.	H.G.	S.X.
0.33	36.0	0.95	Zm.2716.1.S1_at	CD440659	-	-	3e+0	At4g28700	AMT1	O.I.	H.G.	S.X.
0.33	36.0	0.96	Zm.15185.1.A1_at	BM266737	-	-	9e+0	At2g17640	ATSERAT3	O.I.	H.G.	S.X.
0.33	36.0	0.96	Zm.10142.1.A1_at	BM381368	hypothetical protein LOC100192591	-	4e-1	At1g22885	unknown protein	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.7021.1.S1_at	CD440551	mitochondrial import inner membrane translocase subunit Tim8	-	3e-4	At5g50810	TIM8	O.I.	H.G.	S.X.
0.32	33.4	0.95	Zm.12630.1.A1_at	CA831422	hypothetical protein LOC100194118	-	1e+0	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	O.I.	H.G.	S.X.
0.32	33.4	0.95	Zm.14820.1.S1_at	AY106101.1	-	-	5e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.
0.32	33.4	0.97	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.
0.31	31.6	0.96	Zm.5637.1.A1_at	BM079527	hypothetical protein LOC100217032	-	3e+0	At3g50250	unknown protein	O.I.	H.G.	S.X.
0.31	31.6	0.96	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.
0.30	29.8	0.96	Zm.6335.1.A1_at	AI691439	-	-	3e+0	At1g32583	-	O.I.	H.G.	S.X.
0.30	29.8	0.97	ZmAffx.956.1.S1_at	AI833508	-	-	8e-1	At1g08580	unknown protein	O.I.	H.G.	S.X.
0.30	29.8	0.96	Zm.4822.1.S1_at	AY104398.1	-	-	1e+0	At3g27400	pectate lyase family protein	O.I.	H.G.	S.X.
0.30	29.8	0.96	Zm.13087.2.A1_a_at	CF629954	hypothetical protein LOC100276346	-	3e-4	At5g47860	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.97	Zm.3168.1.A1_x_at	AW331178	-	-	5e-2	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.
0.28	28.1	0.92	Zm.18672.1.A1_at	CO522055	hypothetical protein LOC100273696	-	6e+0	At5g26960	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.4619.2.A1_at	CK370334	hypothetical protein LOC100273548	-	5e-29	At4g31120	SKB1 (SHK1 BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.27	24.6	0.94	Zm.11946.1.A1_at	BM382035	-	-	2e+0	At1g77093	-	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.13597.1.A1_at	CF630886	hydrolase/ protein serine/threonine phosphatase	-	7e-1	At1g13900	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.13412.1.S1_at	CF630246	-	-	2e-7	At2g36230	APG10 (ALBINO AND PALE GREEN 10)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.9 99.4 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3 99.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8 99.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8 99.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0 99.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2 98.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7 98.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
21.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.3135.1.S1_at
Gene name	catalytic/ protein phosphatase type 2C
Homology with Arabidopsis	Similar to At1g47380: protein phosphatase 2C-related / PP2C-related (HF=2e-13)
Module size	6 genes
NF	0.71
%ile	93.0

Co-expression analysis

Gene ID Zm.3135.1.S1_at Gene name catalytic/ protein phosphatase type 2C Homology with ArabidopsisSimilar to At1g47380: protein phosphatase 2C-related / PP2C-related (HF=2e-13) Module size 6 genes NF 0.71 %ile 93.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.3135.1.S1_at

Gene name catalytic/ protein phosphatase type 2C
Homology with Arabidopsis Similar to At1g47380: protein phosphatase 2C-related / PP2C-related (HF=2e-13)

Module size 6 genes

NF 0.71

%ile 93.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera